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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10011123 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ERF | ||||||||
Protein Properties | Length: 173aa MW: 18029.4 Da PI: 12.0698 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.4 | 4.2e-19 | 69 | 119 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g Lus10011123 69 PVYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAALSIKG 119 68*****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.4E-13 | 69 | 119 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.787 | 70 | 129 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-30 | 70 | 130 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-20 | 70 | 129 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.0E-33 | 70 | 135 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-10 | 71 | 82 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.39E-27 | 71 | 129 | No hit | No description |
PRINTS | PR00367 | 2.1E-10 | 93 | 109 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MAAADSPPPP TASSSSSSSS SSGFSGQPIP DPEPNKTNSN INNNKSKLKR GRGDGGSGGG 60 GSGRTTKHPV YRGVRMRTWG KWVSEIREPR KKSRIWLGTF ATPEMAARAH DVAALSIKGP 120 AAAAILNFPQ LSASLPRPVS SSPATSGPLP SKPPPWTSPP PPWLLLRISF AR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-19 | 60 | 130 | 4 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10011123 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009380474.1 | 2e-41 | PREDICTED: ethylene-responsive transcription factor TINY | ||||
Swissprot | Q9LYD3 | 2e-41 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A2G9GZF4 | 1e-41 | A0A2G9GZF4_9LAMI; Uncharacterized protein | ||||
STRING | Lus10011123 | 1e-116 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 8e-42 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10011123 |
Publications ? help Back to Top | |||
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