PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011044
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ARR-B
Protein Properties Length: 510aa    MW: 56567.7 Da    PI: 5.964
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011044genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.99.8e-28290344156
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                  k +++Wt +LH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQkYR++
  Lus10011044 290 KMKVDWTADLHRKFVQAVEQL-GVDQAIPSKILELMKVEGLTRHNVASHLQKYRMH 344
                  5689*****************.********************************96 PP
2Response_reg24.51.4e-09201211109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+ d++ + +  +++ le+ +y +va++ + +eal  + +k   +++ ++ +      G+++l++    +++lp i+ +  +  +++ +++ +Ga+
   Lus10011044  20 VLLLDEDTNSAAEIKSQLESMDY-SVAAFCNEKEALIAFSDKPesFHVAIVEV----TAGMTFLES----AKDLPTIMTSNINCLSTMMKCIALGAM 107
                   79999999***************.***************777667*****995....456666654....34688888888888************* PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   +fl Kp ++++l++
   Lus10011044 108 EFLHKPLSEDKLRN 121
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.99E-1416130IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.7E-1416135No hitNo description
PROSITE profilePS5011019.51319127IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.5E-720122IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.59E-821126No hitNo description
PROSITE profilePS5129415.398287346IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.8E-27288346IPR009057Homeodomain-like
SuperFamilySSF466893.4E-18289347IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-25290345IPR006447Myb domain, plants
PfamPF002491.3E-7293342IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MVCTANDLSE WKDFPKGLKV LLLDEDTNSA AEIKSQLESM DYSVAAFCNE KEALIAFSDK  60
PESFHVAIVE VTAGMTFLES AKDLPTIMTS NINCLSTMMK CIALGAMEFL HKPLSEDKLR  120
NIWQHVVHKA FNAGQESLNA KKDSVVVSTL QLKVETEEAE NASPVVDENN AGSDKYPAPS  180
TPQLKQGSRL LDDGDCQDHT NCSTEQEGES KSVETTLAMA ETSVQVDTEN LTDGKVLKEE  240
DDLSTGAKTE NLKSPCPQDS HDKPDSSNED RSKSSSLNTT SGVTKANRKK MKVDWTADLH  300
RKFVQAVEQL GVDQAIPSKI LELMKVEGLT RHNVASHLQK YRMHKRHILP KSEDRRWSVQ  360
HKDQPKRSYY SHKPPIMAYP PSYHQQQHSN HAFPPPMWGA AAAGTHHVQM WGPPSHSPWT  420
SLTDSWHWKP YPPLHADTWG CPVMPPQMPY SYLPQAEEVI DKVVKEAISK PWLPLPLGLN  480
PPSTDSVLDE LCKQGIISTV PCIDGSNSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-15288343358ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011044
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024440395.10.0two-component response regulator-like APRR2 isoform X4
SwissprotQ6LA431e-120APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A3N7FBQ80.0A0A3N7FBQ8_POPTR; Uncharacterized protein
STRINGLus100110440.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-122ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]