PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10010845

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

GRAS

Protein Properties

Length: 660aa MW: 74536.2 Da PI: 6.5241

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10010845	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	49.1	1e-15	321	384	1	64
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal 64 l++lL++cA+av+++d + a++lL++++ ++sp gd++qRla +f+ +L+arla+++s++yk l Lus10010845 321 LRTLLITCAQAVAADDGTSASKLLKQIRLHSSPFGDANQRLANCFADGLEARLAGTGSQIYKGL 384 6789*********************************************************976 PP
2	GRAS	239.4	1.6e-73	410	656	129	374
GRAS 129 lqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleser 224 +q ++ Rp+gpp+lR+Tg++ p++g +e++eetg+rLa +Ae+++vpfe+n+ +akr+e+++le+L+++++E ++Vn+ ++ ++llde+v+++s+r Lus10010845 410 IQRMSWRPGGPPKLRVTGIDFPQPGfrPAERVEETGRRLAAYAEKFKVPFEYNA-IAKRWENVQLEDLKIEKDEFVIVNCLYRAKNLLDETVCVDSPR 506 799*******************9*************************.7************************************** PP GRAS 225 devLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322 + vL l+k+++P+++++ + n++ F++rf eal ++sa+fd+le+ +pre++er+ +E+e++gre+ nv+aceg r+er et+++W+ r +a Lus10010845 507 KIVLGLIKRINPRLFIHGVINGAFNAPFFVTRFREALFHFSAMFDMLETVVPREDQERMLIEKEIFGREALNVIACEGWGRVERPETYKQWQVRCLRA 604 ********************************************************************************************** PP GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 GF++++ +++++k+a+ ++ + + + ++e++++l++gWk+r ++++S+W+ Lus10010845 605 GFEQLHWDKETMKEANKKAKELYHKDFLIDEDNKWLLQGWKGRIIYALSVWK 656 *******************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	3.5E-13	321	384	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.4E-71	410	656	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	35.193	410	636	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 660 aa Download sequence Send to blast
MDPRLSRFSS SNHVAAQLIE QPVSVLPNPT FNTFKGFQHS NETPNLSTVT QQEEEEDCDF 60 SDTVLSYISQ ILMDEEMEDK TCMLQDSLDL QAAEKSFYDV LGKKYPPSPE PSTHLYNPNN 120 GFSYLDGINA SWNFNQTDYD PFQLSQSSYT SSNNSVGTST TTDGLVDSPS TSTFKFPDFG 180 SESQSISQFN KGVEEANKFL PNGNNLFLNI QTNARICASN DVKVESLPRG RKNLLIREDV 240 PIEEDRSTKV LAVHKDSNLP PDVFDSVLLC SVGKGKEDLT ALRESLKNAT IRDIQNGQHR 300 TFRQGRGRVK KGVAKKDVVD LRTLLITCAQ AVAADDGTSA SKLLKQIRLH SSPFGDANQR 360 LANCFADGLE ARLAGTGSQI YKGLDRVGGC NEGPCDRFRS SLRISMADSI QRMSWRPGGP 420 PKLRVTGIDF PQPGFRPAER VEETGRRLAA YAEKFKVPFE YNAIAKRWEN VQLEDLKIEK 480 DEFVIVNCLY RAKNLLDETV CVDSPRKIVL GLIKRINPRL FIHGVINGAF NAPFFVTRFR 540 EALFHFSAMF DMLETVVPRE DQERMLIEKE IFGREALNVI ACEGWGRVER PETYKQWQVR 600 CLRAGFEQLH WDKETMKEAN KKAKELYHKD FLIDEDNKWL LQGWKGRIIY ALSVWKPAS*

Sequence ? help Back to Top

Protein Sequence Length: 660 aa Download sequence Send to blast

MDPRLSRFSS SNHVAAQLIE QPVSVLPNPT FNTFKGFQHS NETPNLSTVT QQEEEEDCDF  60
SDTVLSYISQ ILMDEEMEDK TCMLQDSLDL QAAEKSFYDV LGKKYPPSPE PSTHLYNPNN  120
GFSYLDGINA SWNFNQTDYD PFQLSQSSYT SSNNSVGTST TTDGLVDSPS TSTFKFPDFG  180
SESQSISQFN KGVEEANKFL PNGNNLFLNI QTNARICASN DVKVESLPRG RKNLLIREDV  240
PIEEDRSTKV LAVHKDSNLP PDVFDSVLLC SVGKGKEDLT ALRESLKNAT IRDIQNGQHR  300
TFRQGRGRVK KGVAKKDVVD LRTLLITCAQ AVAADDGTSA SKLLKQIRLH SSPFGDANQR  360
LANCFADGLE ARLAGTGSQI YKGLDRVGGC NEGPCDRFRS SLRISMADSI QRMSWRPGGP  420
PKLRVTGIDF PQPGFRPAER VEETGRRLAA YAEKFKVPFE YNAIAKRWEN VQLEDLKIEK  480
DEFVIVNCLY RAKNLLDETV CVDSPRKIVL GLIKRINPRL FIHGVINGAF NAPFFVTRFR  540
EALFHFSAMF DMLETVVPRE DQERMLIEKE IFGREALNVI ACEGWGRVER PETYKQWQVR  600
CLRAGFEQLH WDKETMKEAN KKAKELYHKD FLIDEDNKWL LQGWKGRIIY ALSVWKPAS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-32	328	659	26	382	Protein SCARECROW
5b3h_A	8e-32	328	659	25	381	Protein SCARECROW
5b3h_D	8e-32	328	659	25	381	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10010845

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024459869.1	0.0	scarecrow-like protein 9 isoform X1
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A251KC79	0.0	A0A251KC79_MANES; Uncharacterized protein
STRING	Lus10010845	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein

Link Out ? help Back to Top
Phytozome	Lus10010845