PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10010845
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 660aa    MW: 74536.2 Da    PI: 6.5241
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10010845genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS49.11e-15321384164
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal 64 
                  l++lL++cA+av+++d + a++lL++++ ++sp gd++qRla +f+ +L+arla+++s++yk l
  Lus10010845 321 LRTLLITCAQAVAADDGTSASKLLKQIRLHSSPFGDANQRLANCFADGLEARLAGTGSQIYKGL 384
                  6789*********************************************************976 PP
2GRAS239.41.6e-73410656129374
         GRAS 129 lqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleser 224
                  +q ++ Rp+gpp+lR+Tg++ p++g   +e++eetg+rLa +Ae+++vpfe+n+ +akr+e+++le+L+++++E ++Vn+ ++ ++llde+v+++s+r
  Lus10010845 410 IQRMSWRPGGPPKLRVTGIDFPQPGfrPAERVEETGRRLAAYAEKFKVPFEYNA-IAKRWENVQLEDLKIEKDEFVIVNCLYRAKNLLDETVCVDSPR 506
                  799*********************9*****************************.7****************************************** PP

         GRAS 225 devLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                  + vL l+k+++P+++++   +   n++ F++rf eal ++sa+fd+le+ +pre++er+ +E+e++gre+ nv+aceg  r+er et+++W+ r  +a
  Lus10010845 507 KIVLGLIKRINPRLFIHGVINGAFNAPFFVTRFREALFHFSAMFDMLETVVPREDQERMLIEKEIFGREALNVIACEGWGRVERPETYKQWQVRCLRA 604
                  ************************************************************************************************** PP

         GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  GF++++ +++++k+a+   ++ + + + ++e++++l++gWk+r ++++S+W+
  Lus10010845 605 GFEQLHWDKETMKEANKKAKELYHKDFLIDEDNKWLLQGWKGRIIYALSVWK 656
                  ***********************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035143.5E-13321384IPR005202Transcription factor GRAS
PfamPF035145.4E-71410656IPR005202Transcription factor GRAS
PROSITE profilePS5098535.193410636IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MDPRLSRFSS SNHVAAQLIE QPVSVLPNPT FNTFKGFQHS NETPNLSTVT QQEEEEDCDF  60
SDTVLSYISQ ILMDEEMEDK TCMLQDSLDL QAAEKSFYDV LGKKYPPSPE PSTHLYNPNN  120
GFSYLDGINA SWNFNQTDYD PFQLSQSSYT SSNNSVGTST TTDGLVDSPS TSTFKFPDFG  180
SESQSISQFN KGVEEANKFL PNGNNLFLNI QTNARICASN DVKVESLPRG RKNLLIREDV  240
PIEEDRSTKV LAVHKDSNLP PDVFDSVLLC SVGKGKEDLT ALRESLKNAT IRDIQNGQHR  300
TFRQGRGRVK KGVAKKDVVD LRTLLITCAQ AVAADDGTSA SKLLKQIRLH SSPFGDANQR  360
LANCFADGLE ARLAGTGSQI YKGLDRVGGC NEGPCDRFRS SLRISMADSI QRMSWRPGGP  420
PKLRVTGIDF PQPGFRPAER VEETGRRLAA YAEKFKVPFE YNAIAKRWEN VQLEDLKIEK  480
DEFVIVNCLY RAKNLLDETV CVDSPRKIVL GLIKRINPRL FIHGVINGAF NAPFFVTRFR  540
EALFHFSAMF DMLETVVPRE DQERMLIEKE IFGREALNVI ACEGWGRVER PETYKQWQVR  600
CLRAGFEQLH WDKETMKEAN KKAKELYHKD FLIDEDNKWL LQGWKGRIIY ALSVWKPAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-3232865926382Protein SCARECROW
5b3h_A8e-3232865925381Protein SCARECROW
5b3h_D8e-3232865925381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10010845
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024459869.10.0scarecrow-like protein 9 isoform X1
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A251KC790.0A0A251KC79_MANES; Uncharacterized protein
STRINGLus100108450.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein