PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10010756
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 314aa    MW: 35157.4 Da    PI: 10.0874
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10010756genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.81.1e-1433118897
                  -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  ++ l+++ l lp kf++++g++   s   +l  ++g  W+v +  ++k+++++l++GW eF + + +  g f+vFk+ g s f   v +f
  Lus10010756  33 PYILQQNKLKLPLKFVRRYGSE--ISSIAKLSLPNGHAWKVGVEKKRKGEEMWLSDGWGEFMDHHSISKGFFLVFKYRGYSAF--DVEMF 118
                  67788999***********966..77799999***********88888888*************************9887887..66655 PP
2B352.68.6e-17206309197
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS...-EEEEEE..EEETTE.....EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esg...rsWevkliyrkksgr.....yvltkGWkeFvkangLkegDfvvFkldgr 87 
                  f+  l++ +v++++r v+p +fa++h  +    e+ t++l+  ++g   r+W+v+++      +     ++l+ GW++F ++n+L +gD+++F+l++ 
  Lus10010756 206 FIILLSSDHVGSKARPVIPLSFARDHipD--RGETSTVVLQMgQHGksvRQWSVQMTR--PETSalfrsVTLGLGWRQFKDDNNLGVGDVCLFHLVSP 299
                  666788999*****************752..344457777664777999*******54..3333345669999**********************988 PP

                  SEE..EEEEE CS
           B3  88 sefelvvkvf 97 
                  ++  + v++f
  Lus10010756 300 EDLVFDVSIF 309
                  8887777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.3E-1923120IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-1723120IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.06926121IPR003340B3 DNA binding domain
CDDcd100173.08E-1526119No hitNo description
SMARTSM010199.0E-927121IPR003340B3 DNA binding domain
PfamPF023625.7E-1233113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-17199310IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-16201306IPR015300DNA-binding pseudobarrel domain
CDDcd100178.60E-19204310No hitNo description
PROSITE profilePS5086313.183206312IPR003340B3 DNA binding domain
PfamPF023628.0E-14206309IPR003340B3 DNA binding domain
SMARTSM010192.3E-12206312IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MASLHAPKNR SRTSSPSTMN KLPHTSFFRI ILPYILQQNK LKLPLKFVRR YGSEISSIAK  60
LSLPNGHAWK VGVEKKRKGE EMWLSDGWGE FMDHHSISKG FFLVFKYRGY SAFDVEMFDL  120
TTSSISYSPP PPQESGFPNI VVISDDEKDD KIGGGEIEKT LERLKASGIV TGRQHSFNRK  180
LREMYKKCKK GVEDAILASN PAFPSFIILL SSDHVGSKAR PVIPLSFARD HIPDRGETST  240
VVLQMGQHGK SVRQWSVQMT RPETSALFRS VTLGLGWRQF KDDNNLGVGD VCLFHLVSPE  300
DLVFDVSIFP AAK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10010756
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100107560.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-19B3 family protein