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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10010632 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ERF | ||||||||
Protein Properties | Length: 212aa MW: 22742.8 Da PI: 5.595 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.7 | 2.8e-18 | 43 | 93 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + ykGVr++ +g+WvAeIr+p + r +r +lg+f+t +Aa a++ a++kl+g Lus10010632 43 CSYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSHDAALAYDTAARKLYG 93 67*****999.**********8...3.35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.9E-13 | 43 | 93 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.19E-29 | 43 | 103 | No hit | No description |
SuperFamily | SSF54171 | 3.47E-21 | 44 | 102 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.062 | 44 | 101 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-30 | 44 | 102 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-35 | 44 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-9 | 45 | 56 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-9 | 67 | 83 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MSTSSSSTGE PGSNWNPHMK KAAQASSRKG CMRGKGGPEN ALCSYKGVRQ RTWGKWVAEI 60 REPNRGARLW LGTFDTSHDA ALAYDTAARK LYGPHAKLNL PNHNDVVHVP KQDSGDATTT 120 TSSSFDMPAG YYNNYSSNSS SEEGISSSSY DNYNEIGVGN EFWSNLQVNL PLFDESIWAE 180 AAMSLDYFPV VAMDGGQLAG GWDAASASAP N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-18 | 45 | 101 | 6 | 63 | ATERF1 |
3gcc_A | 2e-18 | 45 | 101 | 6 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00240 | DAP | Transfer from AT1G75490 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10010632 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022772142.1 | 3e-65 | dehydration-responsive element-binding protein 2D-like | ||||
Swissprot | Q9LQZ2 | 7e-54 | DRE2D_ARATH; Dehydration-responsive element-binding protein 2D | ||||
TrEMBL | A0A1U8PEC9 | 1e-60 | A0A1U8PEC9_GOSHI; dehydration-responsive element-binding protein 2D-like | ||||
STRING | Lus10010632 | 1e-156 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2562 | 33 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 9e-51 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10010632 |
Publications ? help Back to Top | |||
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