PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10010462
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 457aa    MW: 50310.4 Da    PI: 6.568
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10010462genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS221.83.5e-68222615249
         GRAS  15 gdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeerv 112
                  ++l  a+ lL ++sel+sp g++ +R+ ayf+ AL+ar+++s+ + y+ l++++ + ++s++ ++a++ ++ +sP++kfsh+taNqaI +a++ge+rv
  Lus10010462   2 DNLDDATDLLPEISELSSPFGSSPERVGAYFAHALQARVVSSCLGSYSPLTTKNVTLTQSQKFFTAFQSYNSISPLIKFSHFTANQAIFQALDGEDRV 99 
                  58899********************************************************************************************* PP

         GRAS 113 HiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlql 210
                  H+iD+di+qGlQWp L++ LasR+++  s+RiTg+gs    s+e le+tg+rLa+fA++lg+pfef+++  k  +  +l++L ++p+Ea++V++++  
  Lus10010462 100 HVIDLDIMQGLQWPGLFHILASRTKKIRSMRITGFGS----STELLESTGRRLADFASSLGLPFEFHPVEGKIGSVTDLSQLGIRPREAVIVHWMH-- 191
                  *************************************....99*************************8777777779*****************9.. PP

         GRAS 211 hrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249
                  h l+d ++s  s    +L+l+  ++Pk+v++veq++ ++
  Lus10010462 192 HCLYDITGSDLS----TLSLLSLVRPKLVTIVEQDLRRT 226
                  778877888777....9******************8775 PP
2GRAS205.92.3e-63225452135373
         GRAS 135 RpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvk 232
                  R+++  s+RiTg+gs    s+e le+tg+rLa+fA++lg+pfef+++  k  +  +l++L ++p+Ea++V++++  h l+d ++s  s    +L+l+ 
  Lus10010462 225 RTKKIRSMRITGFGS----STELLESTGRRLADFASSLGLPFEFHPVEGKIGSVTDLSQLGIRPREAVIVHWMH--HCLYDITGSDLS----TLSLLS 312
                  6688899********....99*************************8777777779*****************9..778877888777....9***** PP

         GRAS 233 slsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                   ++Pk+v++veq+++h +++Fl rf+eal+yysalfd+l  +l +e+ er++vE++l+g ei+n+va  g +r+ + + +e+W + l+++GF+pv+l+
  Lus10010462 313 LVRPKLVTIVEQDLSH-GGNFLGRFVEALHYYSALFDALGDGLEAENLERHTVEQQLFGCEIRNIVAVGGPKRTGEVK-VERWGDELRRVGFRPVSLG 408
                  ****************.789****************************************************998887.9****************** PP

         GRAS 331 ekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvSaW 373
                   + a+qa lll +++++gy++  ee+gsl lgWkd +L+++SaW
  Lus10010462 409 GNPAAQAGLLLGMFPWKGYTLVeEENGSLKLGWKDLSLLTASAW 452
                  *******************97637799999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.5331432IPR005202Transcription factor GRAS
PfamPF035141.2E-652226IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MDNLDDATDL LPEISELSSP FGSSPERVGA YFAHALQARV VSSCLGSYSP LTTKNVTLTQ  60
SQKFFTAFQS YNSISPLIKF SHFTANQAIF QALDGEDRVH VIDLDIMQGL QWPGLFHILA  120
SRTKKIRSMR ITGFGSSTEL LESTGRRLAD FASSLGLPFE FHPVEGKIGS VTDLSQLGIR  180
PREAVIVHWM HHCLYDITGS DLSTLSLLSL VRPKLVTIVE QDLRRTKKIR SMRITGFGSS  240
TELLESTGRR LADFASSLGL PFEFHPVEGK IGSVTDLSQL GIRPREAVIV HWMHHCLYDI  300
TGSDLSTLSL LSLVRPKLVT IVEQDLSHGG NFLGRFVEAL HYYSALFDAL GDGLEAENLE  360
RHTVEQQLFG CEIRNIVAVG GPKRTGEVKV ERWGDELRRV GFRPVSLGGN PAAQAGLLLG  420
MFPWKGYTLV EEENGSLKLG WKDLSLLTAS AWAPSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-95245433380Protein SCARECROW
5b3h_A5e-95245432379Protein SCARECROW
5b3h_D5e-95245432379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10010462
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4471726e-39AM447172.2 Vitis vinifera contig VV78X057306.3, whole genome shotgun sequence.
GenBankFQ3933796e-39FQ393379.1 Vitis vinifera clone SS0AFA26YE15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016187881.11e-146scarecrow-like protein 23
RefseqXP_024183770.11e-146scarecrow-like protein 23
RefseqXP_025642717.11e-146scarecrow-like protein 23
SwissprotQ9FHZ11e-107SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A2P6S0T31e-144A0A2P6S0T3_ROSCH; Putative transcription factor GRAS family
TrEMBLA0A445A7K91e-144A0A445A7K9_ARAHY; Uncharacterized protein
TrEMBLA0A445E2L41e-144A0A445E2L4_ARAHY; Uncharacterized protein
STRINGLus100104620.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-105GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]