PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10010453 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 285aa MW: 31334.6 Da PI: 7.0709 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.7 | 2.9e-15 | 66 | 120 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++++hn+ Er RR++iN ++ Lr+llP+ + + p kKls +++ ++v+YI +Lq Lus10010453 66 KKMNHNASERERRKKINALYSSLRSLLPSsD-HHPMKKLSIPTTVSRVVKYIPELQ 120 689**************************65.99*******************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.19E-15 | 64 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.735 | 65 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.2E-14 | 66 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-12 | 66 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.99E-5 | 66 | 124 | No hit | No description |
SMART | SM00353 | 2.0E-10 | 71 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 285 aa Download sequence Send to blast |
MMAMSSTSSF SSHQSNINLP LIPSSNWPLL SNDPDSITLL PNLNLDQATL FPAAAGQVGG 60 GTTTVKKMNH NASERERRKK INALYSSLRS LLPSSDHHPM KKLSIPTTVS RVVKYIPELQ 120 QQVETLTLKK KQLISTSLPH IPKPEHVQTL GEQDEQQHIT NLDRNRRVSL VGTNKIISGT 180 NFSSSSSSSS VSTSWVSDDE VMVQVSVDTT NNMVHVSDLL FHLEEECGLI VMNTSSLTSP 240 QGMTFYNLHL QVEECRRGLI LLDSEALSEK LTSLVEQGRK LVCS* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10010453 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
STRING | Lus10010453 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2402 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G56970.1 | 1e-24 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10010453 |