PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10010453
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 285aa    MW: 31334.6 Da    PI: 7.0709
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10010453genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.72.9e-1566120155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  ++++hn+ Er RR++iN  ++ Lr+llP+ + + p kKls  +++ ++v+YI +Lq
  Lus10010453  66 KKMNHNASERERRKKINALYSSLRSLLPSsD-HHPMKKLSIPTTVSRVVKYIPELQ 120
                  689**************************65.99*******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-1564141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.73565119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-1466124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-1266120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.99E-566124No hitNo description
SMARTSM003532.0E-1071125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MMAMSSTSSF SSHQSNINLP LIPSSNWPLL SNDPDSITLL PNLNLDQATL FPAAAGQVGG  60
GTTTVKKMNH NASERERRKK INALYSSLRS LLPSSDHHPM KKLSIPTTVS RVVKYIPELQ  120
QQVETLTLKK KQLISTSLPH IPKPEHVQTL GEQDEQQHIT NLDRNRRVSL VGTNKIISGT  180
NFSSSSSSSS VSTSWVSDDE VMVQVSVDTT NNMVHVSDLL FHLEEECGLI VMNTSSLTSP  240
QGMTFYNLHL QVEECRRGLI LLDSEALSEK LTSLVEQGRK LVCS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10010453
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100104530.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.11e-24bHLH family protein