PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10010442
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family G2-like
Protein Properties Length: 303aa    MW: 32399.1 Da    PI: 6.5092
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10010442genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.71.7e-30105158155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Lus10010442 105 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 158
                  59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.059102161IPR017930Myb domain
SuperFamilySSF466892.87E-20102162IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-30104163IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-24106158IPR006447Myb domain, plants
PfamPF002491.2E-7108157IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MREDDSNWFA KWEEELPPPD ELMPISQTLI TPDLALAFDI RNHPMNQNHQ PPPLPVPPPS  60
SSGNPSSIAS IAATSSEFAA EESAEFGSNG NGGGADDDQA RTLKRPRLVW TPQLHKRFVD  120
AVAHLGIKNA VPKTIMQLMS VDGLTRENVA SHLQKYRLYL KRMQGLPSGG GGGNCHGGGG  180
GDSATDRLFA SSPVPAHFLH PGGRPTSDHF LPFVPVTALQ QHHQQMAAAA AAAGVAHPQY  240
HRQIGQFDHP FLARQAPPSQ QQQQAVPRMG PPVQNVEDLE SSAGNGNDGG RKALTLFPTA  300
ED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-33105161157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10010442
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019162796.11e-108PREDICTED: transcription factor PCL1-like
SwissprotO222102e-61MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A059A3P31e-106A0A059A3P3_EUCGR; Uncharacterized protein
TrEMBLA0A2P2JJL71e-106A0A2P2JJL7_RHIMU; Uncharacterized protein
STRINGLus100104420.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85423045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.15e-67G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]