PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10010404

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

G2-like

Protein Properties

Length: 285aa MW: 30829 Da PI: 6.3505

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10010404	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.1	8.5e-33	23	77	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG+ekAtPk++l+lm++kgLtl+h+kSHLQkYRl Lus10010404 23 KPRLRWTADLHDRFVDAVTKLGGPEKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 77 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-31	20	78	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.027	20	80	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.8E-24	23	78	IPR006447	Myb domain, plants
SuperFamily	SSF46689	5.91E-16	23	80	IPR009057	Homeodomain-like
Pfam	PF00249	8.6E-9	25	76	IPR001005	SANT/Myb domain
Pfam	PF14379	7.7E-20	134	178	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MAAFGGGGMY QYENGVVMTR DPKPRLRWTA DLHDRFVDAV TKLGGPEKAT PKSVLRLMGL 60 KGLTLYHLKS HLQKYRLGQQ GNNKHSNSPE QSSRDIHSNG SSSYIHFNNH SSNGGASTSS 120 SISSRDNEPG GDLHNALKPH IEVQKRLEEQ LEVQQKLQMR IEAQGKYLQA ILEKAQKSLS 180 MAMESSTGGG GCNIDATRAQ LTDFNVALST LIRMNNKNEE EDQEGGVDDG LKHLYLGNNG 240 GGGEEVQFDL NVNNGGNGDV LGGNNNGDDG SDQLELRMVS YGIS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-20	23	76	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-20	23	76	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-20	23	76	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-20	23	76	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10010404

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018852196.1	3e-91	PREDICTED: myb family transcription factor PHL11
Swissprot	C0SVS4	2e-70	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A2I4H7R8	8e-90	A0A2I4H7R8_JUGRE; myb family transcription factor PHL11
STRING	Lus10010404	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5101	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	5e-55	G2-like family protein

Link Out ? help Back to Top
Phytozome	Lus10010404

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]