PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10010335
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 654aa    MW: 71050.5 Da    PI: 10.6756
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10010335genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.8e-092476247
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqky 47
                     + W t+E++ll+ avk++G  +W+++a++++          t++ c+ ++q++
      Lus10010335 24 QTWGTWEELLLAFAVKRHGFASWESVAAELQtktslpqVLATAERCRQKYQDL 76
                     78*****************************999999988999****999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00372279IPR001005SANT/Myb domain
PfamPF002495.0E-92476IPR001005SANT/Myb domain
CDDcd001672.10E-42576No hitNo description
Gene3DG3DSA:1.20.920.102.4E-15252392IPR001487Bromodomain
SMARTSM002972.3E-10270376IPR001487Bromodomain
SuperFamilySSF473701.57E-16273375IPR001487Bromodomain
CDDcd043692.41E-12280371No hitNo description
PfamPF004394.4E-10280360IPR001487Bromodomain
PROSITE profilePS5001410.608285357IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MAEESLDHHQ LRCQSSSAAD EQSQTWGTWE ELLLAFAVKR HGFASWESVA AELQTKTSLP  60
QVLATAERCR QKYQDLNRRF SVAGELVSNG SVEKAVHIPW IEELRKLRVA ELKQEVQRYD  120
VSILSLQLKV KKLEDEREHG LQEKDGGKRS KPDLPAERHR SEADAKVSVS MSSRESDRDN  180
RSVNESNSTA SGAKKAADGV KLEDPKTSGS NSKREEEEET ESVSQRSGEI ESSSASLRQK  240
RKRQGRKRRR NDVDGGGSKA VEEVGNGVGV GGQSEPLIGL MDMIRAHEHG SLFERRLQSQ  300
ETDAYSSTVK QHLDLETIQS KLLRDELSYP SSLSFYRDLL LIFTNAIVFF PKSSAQSLAA  360
KQLRSIVVRE MKKEPVTLKS DSSQPTDSIP PPQQPKVAEP EKLPAPLVVC RRRSSMSAKP  420
SSSTSVQKVE QPVVAVTPQP KESTDREVEQ GSPPIAKPEK KAVTGARSSR RSNKKNVTKT  480
IPSNKRQNGS PGNKATTTAA EKLETPKKKT EASGAEKKRS AAADFLKRIK KNSPGNALSK  540
KSSTAGNSPG DALSKKKSGG SGNGGGGGSS RGAGEKKKKN DEKGKGRGKQ RLLRSNDEKK  600
PSAAKEVNKP TAGGEGSGKN GSSTSGNKRG RPETGSGVKE TAAQKKPRKR ARR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239249KRKRQGRKRRR
2245249RKRRR
3469475RRSNKKN
4644652KKPRKRARR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10010335
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8309832e-80EU830983.1 Linum usitatissimum clone LU0020C01 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021626454.11e-150uncharacterized protein LOC110625191
TrEMBLA0A2C9V7S81e-148A0A2C9V7S8_MANES; Uncharacterized protein
STRINGLus100103350.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.18e-73DNA-binding bromodomain-containing protein