PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10010101 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 188aa MW: 20857.7 Da PI: 6.7173 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.7 | 7.7e-12 | 2 | 50 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +Er+RR+++N+ ++ Lr+l+P++ + + + a+i A++++k+L+ Lus10010101 2 THITVERNRRRQMNEHLNSLRSLMPPS---YVHRGDQASIIGGAIDFVKELE 50 899************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.71E-9 | 1 | 54 | No hit | No description |
PROSITE profile | PS50888 | 14.335 | 1 | 49 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.42E-15 | 2 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-9 | 2 | 50 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.6E-12 | 2 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-8 | 4 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MTHITVERNR RRQMNEHLNS LRSLMPPSYV HRGDQASIIG GAIDFVKELE QLAQCLEAQK 60 RMKLGEGGAV CEMMRTTAEE EGGRVRAAVE KSETAEIEVT AIENHANLKV KCERRRGQLV 120 RAIVGLEELG LTVLHLNIAS SSDSSSTILY SFNLKIEEEC KIGSADEVAA AVHQIFTHHQ 180 QQQRLPT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10010101 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021897262.1 | 2e-77 | transcription factor bHLH67-like | ||||
Swissprot | Q9M128 | 1e-62 | BH057_ARATH; Transcription factor bHLH57 | ||||
TrEMBL | A0A2K2BKL1 | 2e-75 | A0A2K2BKL1_POPTR; Uncharacterized protein | ||||
STRING | Lus10010101 | 1e-135 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6894 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01460.1 | 1e-62 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10010101 |
Publications ? help Back to Top | |||
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