PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10009944
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-YA
Protein Properties Length: 349aa    MW: 37561.6 Da    PI: 8.61
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10009944genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.41.8e-31177232258
    CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  ep+YVNaKQyq+Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+Rg gGrF
  Lus10009944 177 EPVYVNAKQYQGILRRRQARAKAEVEKKL-IKVRKPYLHESRHRHAMRRARGAGGRF 232
                  8****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.6E-33174235IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.341175235IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.5E-27177232IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.8E-24178200IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860180200IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.8E-24209232IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MLVLCHLLHL VMQPKPVPVP PDGQVGPPYG VPSEPWWRNV GYHSVAPAAA AGGNASKSTE  60
GSESNDDQSQ SNGRTNEEDD DAGKESQTAA SSVRNQGQEK PNLENVTPGV TAVQDESLAQ  120
APRFELVGHS VAGAPNPYQD PYYGGMMAAY AQQPLGYPHL VGVPQTRMPL PLEMALEPVY  180
VNAKQYQGIL RRRQARAKAE VEKKLIKVRK PYLHESRHRH AMRRARGAGG RFAKKTEMEA  240
SGSKAEMRMS GSGPTPSSQS GASSGSEQLL SDSTETWNSS SGQHETRVHR GRNVFEAQQY  300
RSGDGRSGGS QTMAYHSHPG EKGEEGDCSI QHRGSMSSQA SVRPVAIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-19177232358NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216225RHRHAMRRAR
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10009944
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015571336.11e-120nuclear transcription factor Y subunit A-1
RefseqXP_015571337.11e-120nuclear transcription factor Y subunit A-1
RefseqXP_015571338.11e-120nuclear transcription factor Y subunit A-1
SwissprotQ9LXV51e-72NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLB9RID01e-119B9RID0_RICCO; Nuclear transcription factor Y subunit A-1, putative
STRINGLus100099440.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40123461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.31e-56nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]