PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10009816 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | HB-other | ||||||||
Protein Properties | Length: 932aa MW: 102338 Da PI: 6.2605 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 21.6 | 3.6e-07 | 69 | 125 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + +s++e ++++++ ++t +qV+ +F +R + ++ Lus10009816 69 KRPRDLLNPKAIKYMQAVFSIKDAISKKESRQISAQFSITVTQVREFFTSQRSRVRR 125 799**************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.009 | 66 | 126 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.94E-6 | 67 | 129 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.0E-4 | 68 | 130 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.4E-4 | 69 | 125 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-6 | 69 | 128 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 0.00469 | 69 | 116 | No hit | No description |
SuperFamily | SSF47676 | 2.22E-5 | 294 | 384 | IPR017923 | Transcription factor IIS, N-terminal |
Gene3D | G3DSA:1.20.930.10 | 4.4E-5 | 294 | 381 | IPR017923 | Transcription factor IIS, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 932 aa Download sequence Send to blast |
MAGLKEDFAE MEIGTTAASF QRFMDSQKDL FHSQVDQLQR IVVTQCKLTG VNPLSQEMAA 60 GALSINIGKR PRDLLNPKAI KYMQAVFSIK DAISKKESRQ ISAQFSITVT QVREFFTSQR 120 SRVRRLVRLA RENGIQANSL KEPENNLQIE GIPRGSNSVS LSLIVPDMVP ASSNGPPDVT 180 SSTVCPYTAP LQSVGPNSVP LTAANLNPEI LTSVGSDYIP LNCITPYSEP LLSAGPANCE 240 GGQSFSKQEE ILPGLDDSEK HFVETIFGLL KREETFGGQV KLMEWVLQIQ NLTVLYWFLT 300 EGGVMILATW LTQAAAEEQT SVLLVALRVL CHLPLHNAFP EHMSAILHSV NTLRFYRTSD 360 ISSRARILLA KWTKLFARSQ SLRKPNGVGS SIDAQDMILK KSIDEIMSNG FSQTDIGHTE 420 GSLAFPSGNS ENVRRMESSQ TMKLLPASSD DSSRKHILGS PSLADTRERR KVQLVEQPGQ 480 KPSSRSPQGA KSGSISQGRP MSADDIQKAK MRALYMQSKY GRKSNLSNGS NSIKNGVVDK 540 MPTVSIGSSS QVSKVLAKLK REEPNEPVIA AAPMSICMGE HLDNTMLQVE SQVVSKALAE 600 PKNEEPKEPV IDAAPMSICK IEHPDTIMLN VESTAFSKAH AEPKDEEVKE PVVSTPKSTY 660 KDEHQHATEQ KVALKVPIKQ ICSRPQIRWH SPTEVKLDVE WRVGTGEFSK EVEVQRNRNR 720 REMETIYRDV KKIPSNPKEP WDLDMDYDDS LTPEIPIEQQ PDADGTDTQI PDNQLENPVA 780 GAPTIVNGGV AAVAEPDLEL LAVLLKNPEL VFALTSGQAG NLSSDDTMRL LEMMKTGGIA 840 LGNSVNESDG KVGEVSLPSP TPSSNNPRTV RDSGLPCCCK FCHKSLNPHL DFPGEQLFAV 900 YMVVVVLIFI EKNDNSIESK AFFHHPWPVF G* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10009816 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011470994.1 | 0.0 | PREDICTED: homeobox protein LUMINIDEPENDENS | ||||
TrEMBL | A0A067HH03 | 0.0 | A0A067HH03_CITSI; Uncharacterized protein | ||||
STRING | Lus10009816 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9809 | 29 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02560.2 | 1e-144 | HB-other family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10009816 |