PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10009798
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 162aa    MW: 18479.3 Da    PI: 10.6457
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10009798genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.4e-192877255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +ykGVr +k +g+Wv+eIr p++   r r++lg+++++e+Aa+a +aa  +l+g
  Lus10009798 28 KYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDSPEKAARAFDAALYCLRG 77
                 8*****999.**********933...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.2E-312891IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-212887IPR016177DNA-binding domain
PfamPF008471.1E-112877IPR001471AP2/ERF domain
CDDcd000183.91E-282887No hitNo description
Gene3DG3DSA:3.30.730.109.3E-292886IPR001471AP2/ERF domain
PROSITE profilePS5103221.6942885IPR001471AP2/ERF domain
PRINTSPR003673.4E-92940IPR001471AP2/ERF domain
PRINTSPR003673.4E-95167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MEADQSRTYG SSSSTSTTTG MEQEQEVKYK GVRKRKWGKW VSEIRLPNSR ERIWLGSYDS  60
PEKAARAFDA ALYCLRGPVA RFNFPDNPPD ISLTAPCLPL KISNSWLPGM PTKSRAHILP  120
NIISLNKTVN NNNKTKHYCF RHVMEMIKAI ARIRHPQQMR M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1628851472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12935KGVRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10009798
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002516165.23e-40ethylene-responsive transcription factor ERF017
TrEMBLA0A3S8T8Z42e-39A0A3S8T8Z4_FRAAN; Transcription factor ERF10
TrEMBLB9RQZ64e-39B9RQZ6_RICCO; Transcriptional factor TINY, putative
STRINGLus100097981e-119(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.14e-41ERF family protein