PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10009755

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bZIP

Protein Properties

Length: 459aa MW: 48925.6 Da PI: 8.934

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10009755	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.1	1.1e-14	338	380	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++eN++Lk Lus10009755 338 RRQRRMIKNRESAARSRARKQAYTTELEAEVAKLKEENQQLKR 380 79***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.7E-14	334	397	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.335	336	381	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.3E-14	338	381	No hit	No description
CDD	cd14707	6.89E-28	338	383	No hit	No description
Pfam	PF00170	1.8E-12	338	381	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.38E-11	338	382	No hit	No description
PROSITE pattern	PS00036	0	341	356	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MGTNWNFKNI TNDSAQPPGN NLALTRQLSS IYSLTFDEFQ SSVGGIGKDF GSMNMDELLK 60 NIWSAEENQN QNHNMAAAAA AAATEDGGVL QRQGSLTLPR TLSQKTVDEV WKDVWKDSGS 120 GSSGVGVGDI GSGRNPQRQQ TLGEITLEEF LVRAGVVREE ITTPVVAAGK VQQPNGVVGV 180 SPFRNNNTTV GYGIGFQQSN EASHAVGLSS GSNNPNYGSN SSLNVNGIIR SNQVPSAATV 240 TGVQPQLQVH QHQPPQIFPK LQGNVGYGGM MGIGDQGLNI QGMAGLGGGS SPASQVSSDG 300 IGKSNGETSS VSPIVPYPYI GGVRGRRANT AVEKVVERRQ RRMIKNRESA ARSRARKQAY 360 TTELEAEVAK LKEENQQLKR KQVIFIHSFM LAVICIDYWG GVGINNVERL GLVGAGRNDG 420 DAEKSGFSLW NGNYCSFLPR TFMNIDITTY GLSLSVVS*

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MGTNWNFKNI TNDSAQPPGN NLALTRQLSS IYSLTFDEFQ SSVGGIGKDF GSMNMDELLK  60
NIWSAEENQN QNHNMAAAAA AAATEDGGVL QRQGSLTLPR TLSQKTVDEV WKDVWKDSGS  120
GSSGVGVGDI GSGRNPQRQQ TLGEITLEEF LVRAGVVREE ITTPVVAAGK VQQPNGVVGV  180
SPFRNNNTTV GYGIGFQQSN EASHAVGLSS GSNNPNYGSN SSLNVNGIIR SNQVPSAATV  240
TGVQPQLQVH QHQPPQIFPK LQGNVGYGGM MGIGDQGLNI QGMAGLGGGS SPASQVSSDG  300
IGKSNGETSS VSPIVPYPYI GGVRGRRANT AVEKVVERRQ RRMIKNRESA ARSRARKQAY  360
TTELEAEVAK LKEENQQLKR KQVIFIHSFM LAVICIDYWG GVGINNVERL GLVGAGRNDG  420
DAEKSGFSLW NGNYCSFLPR TFMNIDITTY GLSLSVVS*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10009755

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021601956.1	1e-115	bZIP transcription factor 23-like isoform X2
Swissprot	Q9M7Q4	2e-90	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	A0A2C9U138	1e-113	A0A2C9U138_MANES; Uncharacterized protein
STRING	Lus10009755	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1962	34	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49720.2	5e-63	abscisic acid responsive element-binding factor 1

Link Out ? help Back to Top
Phytozome	Lus10009755

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]