PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10009745
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 350aa    MW: 38248.9 Da    PI: 6.5326
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10009745genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.87.9e-08246286954
                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r+RR+ri +++  L++l+P       +K++ a++L +A +Y++ L
  Lus10009745 246 ARQRRERISERIRVLQKLVPGG-----TKMDTASMLDEAANYLNFL 286
                  69******************87.....8***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.97237286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-13242296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-12243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-11245295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-5246286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.02E-4259291No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDGSLEASAG GAWDHEYYPT SPWTNLANLN YAIINSSNGH NQDLFINQGA PEQLNSNYKG  60
QEPGTVMDRC SADGSLDSLD CLLSATNSNN TTADTIEDDD QGISLLFSSE SFWNNSTDDN  120
KNNIIITNGT AVNNSGRGNK RKIVNIQQDG NDKNNPQQKP KKTRRYSSPA AAAGSSSSSN  180
NNNNNINFQS VSQSEPDEEA IAQMKEMMYR AAAFRPLTMG AEEAEAGRKP KRKNVRISTD  240
PQTVAARQRR ERISERIRVL QKLVPGGTKM DTASMLDEAA NYLNFLRSQV KALENNLPPP  300
PSPSSTNFSF FTNYISISNS GGGSSNSMLL PMQTNSLKNP NNLFHHRQL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246251RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10009745
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406283.12e-66transcription factor bHLH87
TrEMBLV4NMP95e-65V4NMP9_EUTSA; Uncharacterized protein
STRINGLus100097450.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45303257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-40bHLH family protein