PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10009745 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 350aa MW: 38248.9 Da PI: 6.5326 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.8 | 7.9e-08 | 246 | 286 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P +K++ a++L +A +Y++ L Lus10009745 246 ARQRRERISERIRVLQKLVPGG-----TKMDTASMLDEAANYLNFL 286 69******************87.....8***************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.97 | 237 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-13 | 242 | 296 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-12 | 243 | 292 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-11 | 245 | 295 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.5E-5 | 246 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.02E-4 | 259 | 291 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MDGSLEASAG GAWDHEYYPT SPWTNLANLN YAIINSSNGH NQDLFINQGA PEQLNSNYKG 60 QEPGTVMDRC SADGSLDSLD CLLSATNSNN TTADTIEDDD QGISLLFSSE SFWNNSTDDN 120 KNNIIITNGT AVNNSGRGNK RKIVNIQQDG NDKNNPQQKP KKTRRYSSPA AAAGSSSSSN 180 NNNNNINFQS VSQSEPDEEA IAQMKEMMYR AAAFRPLTMG AEEAEAGRKP KRKNVRISTD 240 PQTVAARQRR ERISERIRVL QKLVPGGTKM DTASMLDEAA NYLNFLRSQV KALENNLPPP 300 PSPSSTNFSF FTNYISISNS GGGSSNSMLL PMQTNSLKNP NNLFHHRQL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 246 | 251 | RQRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10009745 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006406283.1 | 2e-66 | transcription factor bHLH87 | ||||
TrEMBL | V4NMP9 | 5e-65 | V4NMP9_EUTSA; Uncharacterized protein | ||||
STRING | Lus10009745 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4530 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21330.1 | 1e-40 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10009745 |