PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10009726 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 148aa MW: 16242.3 Da PI: 9.7204 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.4 | 0.00061 | 27 | 49 | 34 | 55 |
TTS-.STCHHHHHHHHHHHHHHH CS HLH 34 pskK.lsKaeiLekAveYIksLq 55 ++kK Ka++L A++Y+k+ q Lus10009726 27 DCKKrTAKASVLGDAIKYLKQVQ 49 5566699*************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 4.0E-4 | 28 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MGIGGKERRE EDPAVADAAG GSNEEADCKK RTAKASVLGD AIKYLKQVQE QSKTLEEQVK 60 RKIIKTVVYV TKSRVYNVND DALSSSTDEN SDGFSFKQTL QFPEFKVGVS GKDVMIRIHM 120 ARLGITDSWG GWNIIRGTIT RNKKDAS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10009726 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010107640.2 | 2e-20 | transcription factor bHLH18 | ||||
TrEMBL | A0A059ALQ3 | 3e-19 | A0A059ALQ3_EUCGR; Uncharacterized protein (Fragment) | ||||
TrEMBL | W9SFB8 | 5e-19 | W9SFB8_9ROSA; Uncharacterized protein | ||||
STRING | Lus10009726 | 1e-104 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 7e-14 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10009726 |