PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10009717
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 471aa    MW: 52909.4 Da    PI: 5.9538
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10009717genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS451.65.1e-138474671374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lLl+cA++v+sg+l++a+ +L+++s+l++pdgd+mqR+ ayft+ALa r+ +s++++ +al++ + +    see+ + k+f++++P+lk++++++
  Lus10009717  47 LIHLLLTCANHVASGSLSNAEIALSQISQLSAPDGDTMQRISAYFTQALADRIIKSWPGVHSALNAAKLA--IPSEEFLVKKYFYDMFPFLKVAFVLT 142
                  689*************************************************************999998..589999999***************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                  NqaI++a+ege++vH+iD+ +s+ +QW+aLlq+L++R+ +gpp+lRiTg+++    +ke l ++ + L + Ae+l++pf+f + + ++le+l++e+Lr
  Lus10009717 143 NQAIMDAMEGEKMVHVIDLHASESAQWIALLQSLSTRQpDGPPHLRITGIHQ----QKEVLDRMSRELIEEAERLDIPFQFIP-ILSSLENLDVEKLR 235
                  ***********************************9998*************....9**************************.7999********** PP

         GRAS 196 vkpgEalaVnlvlqlhrll....................................................desvsles.erdevLklvkslsPkvvv 240
                  vk+gEala++++lqlh +l                                                    +++++ ++ + d++L++++slsPkv+v
  Lus10009717 236 VKTGEALAISSALQLHPFLasddsnessrklsnsnshfqrlfqmrqqgtlgellekdivvdgyspssdsasSSPLCNSNsKMDSFLNVLWSLSPKVMV 333
                  *******************************************************************99875555444458999************** PP

         GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                  v+eq+++hn+ +++er+leal+ y+alfd+le+++pr+s er kvEr+l+g++i+n+vaceg+er+erhe+lekW +rle aGF++v ls++ + q k
  Lus10009717 334 VTEQDSNHNGVTLMERLLEALHSYAALFDCLESNMPRTSVERLKVERMLFGEQIKNIVACEGSERKERHEKLEKWIQRLEIAGFGNVGLSYYGMLQGK 431
                  ************************************************************************************************** PP

         GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +ll++++ dgyr++ee+g++v+gW+drpL+svSaWr
  Lus10009717 432 RLLQTYGCDGYRMKEENGCVVIGWQDRPLFSVSAWR 467
                  ***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.50321447IPR005202Transcription factor GRAS
PfamPF035141.8E-13547467IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MFQDDGSSSA TSSPLQYFSM MPISPNLNSP YPSWLRELKS EERGLYLIHL LLTCANHVAS  60
GSLSNAEIAL SQISQLSAPD GDTMQRISAY FTQALADRII KSWPGVHSAL NAAKLAIPSE  120
EFLVKKYFYD MFPFLKVAFV LTNQAIMDAM EGEKMVHVID LHASESAQWI ALLQSLSTRQ  180
PDGPPHLRIT GIHQQKEVLD RMSRELIEEA ERLDIPFQFI PILSSLENLD VEKLRVKTGE  240
ALAISSALQL HPFLASDDSN ESSRKLSNSN SHFQRLFQMR QQGTLGELLE KDIVVDGYSP  300
SSDSASSSPL CNSNSKMDSF LNVLWSLSPK VMVVTEQDSN HNGVTLMERL LEALHSYAAL  360
FDCLESNMPR TSVERLKVER MLFGEQIKNI VACEGSERKE RHEKLEKWIQ RLEIAGFGNV  420
GLSYYGMLQG KRLLQTYGCD GYRMKEENGC VVIGWQDRPL FSVSAWRCRK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-56294691381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10009717
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008227238.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2N9J6M90.0A0A2N9J6M9_FAGSY; Uncharacterized protein
STRINGLus100097170.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]