PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10009673 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 237aa MW: 26862.9 Da PI: 6.3996 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.1 | 3.2e-08 | 132 | 179 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L+ ++P + k + a +L + ++Y++sLq Lus10009673 132 SHSLAERVRRGKINEKLKCLQNIVPGC----YKTMGMAVMLDEIINYVQSLQ 179 8*************************9....35599999**********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.75E-16 | 126 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.40E-9 | 126 | 182 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.6E-16 | 128 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.824 | 128 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-5 | 132 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.2E-8 | 134 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MAESSFPLLE MDYQIPQFTE LNQFHTFTQI PPSNFFTTHD RFEPDFDPAR HGGVVVEEDI 60 KKRKWLSMKD ASSSMNNNTN NNNISSASDD QSGSCNNRGG RKRVRSNHGN DDEEKLKEVV 120 HVRARRGQAT DSHSLAERVR RGKINEKLKC LQNIVPGCYK TMGMAVMLDE IINYVQSLQN 180 QVDFLSMKLT TASTYYDFNA QEEAMDALQR AKDEGREMKE GYGGGFPCFH SSTWSL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10009673 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022735381.1 | 3e-73 | transcription factor BEE 1-like isoform X1 | ||||
Swissprot | Q8GWK7 | 2e-64 | BEE3_ARATH; Transcription factor BEE 3 | ||||
TrEMBL | A0A061FU69 | 2e-67 | A0A061FU69_THECC; BR enhanced expression 1 | ||||
STRING | Lus10009673 | 1e-180 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3360 | 34 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73830.1 | 2e-63 | BR enhanced expression 3 |
Link Out ? help Back to Top | |
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Phytozome | Lus10009673 |
Publications ? help Back to Top | |||
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