PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10009673
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 237aa    MW: 26862.9 Da    PI: 6.3996
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10009673genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.2e-08132179455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR +iN+++  L+ ++P +     k +  a +L + ++Y++sLq
  Lus10009673 132 SHSLAERVRRGKINEKLKCLQNIVPGC----YKTMGMAVMLDEIINYVQSLQ 179
                  8*************************9....35599999**********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-16126196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.40E-9126182No hitNo description
Gene3DG3DSA:4.10.280.106.6E-16128190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.824128178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-5132179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-8134184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MAESSFPLLE MDYQIPQFTE LNQFHTFTQI PPSNFFTTHD RFEPDFDPAR HGGVVVEEDI  60
KKRKWLSMKD ASSSMNNNTN NNNISSASDD QSGSCNNRGG RKRVRSNHGN DDEEKLKEVV  120
HVRARRGQAT DSHSLAERVR RGKINEKLKC LQNIVPGCYK TMGMAVMLDE IINYVQSLQN  180
QVDFLSMKLT TASTYYDFNA QEEAMDALQR AKDEGREMKE GYGGGFPCFH SSTWSL*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10009673
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022735381.13e-73transcription factor BEE 1-like isoform X1
SwissprotQ8GWK72e-64BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A061FU692e-67A0A061FU69_THECC; BR enhanced expression 1
STRINGLus100096731e-180(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33603467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.12e-63BR enhanced expression 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]