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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10009133 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | GRAS | ||||||||
Protein Properties | Length: 182aa MW: 19909.5 Da PI: 5.2465 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 222.1 | 2.8e-68 | 2 | 178 | 194 | 374 |
GRAS 194 Lrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289 L+++p Ea+aVn+v++lhrll++s+ +++ vL+ +k ++Pk+v+vveqea+hn++ F++rf+eal+yys+lfdsle + +++ ++++ + Lus10009133 2 LDLRPadVEAVAVNSVFELHRLLSQSAGIDK----VLSSIKAMKPKIVTVVEQEANHNGPVFVDRFTEALHYYSSLFDSLEGS---SPSQDLVMSELY 92 55666558***************88777777....*********************************************999...358899****** PP GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 lgr+i+nvvaceg +r+erhetl +Wr r+e+aGF pv+l+++a+kqa++ll+ ++ +dgy+vee++gsl+lgW++rpL+++SaW+ Lus10009133 93 LGRQICNVVACEGGDRVERHETLTQWRGRMESAGFDPVHLGSNAYKQASTLLALFAgGDGYKVEENDGSLMLGWHTRPLIATSAWQ 178 *************************************************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 30.589 | 1 | 157 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.3E-66 | 2 | 178 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MLDLRPADVE AVAVNSVFEL HRLLSQSAGI DKVLSSIKAM KPKIVTVVEQ EANHNGPVFV 60 DRFTEALHYY SSLFDSLEGS SPSQDLVMSE LYLGRQICNV VACEGGDRVE RHETLTQWRG 120 RMESAGFDPV HLGSNAYKQA STLLALFAGG DGYKVEENDG SLMLGWHTRP LIATSAWQLA 180 K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-26 | 10 | 177 | 213 | 378 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10009133 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009334448.1 | 1e-115 | PREDICTED: DELLA protein GAI-like | ||||
Swissprot | Q84TQ7 | 1e-100 | GAI_GOSHI; DELLA protein GAI | ||||
TrEMBL | A0A2N9GN98 | 1e-113 | A0A2N9GN98_FAGSY; Uncharacterized protein | ||||
TrEMBL | Q0HA72 | 1e-112 | Q0HA72_MALDO; DELLA protein | ||||
STRING | Lus10009133 | 1e-133 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF803 | 34 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 1e-96 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10009133 |