PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10009034
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 239aa    MW: 27105.3 Da    PI: 6.5118
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10009034genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.2e-08133180455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR +iN+++  L+ ++P +     k +  a +L + ++Y++sLq
  Lus10009034 133 SHSLAERVRRGKINEKLKCLQNIVPGC----YKTMGMAVMLDEIINYVQSLQ 180
                  8*************************9....35599999**********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-16127197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.58E-9127183No hitNo description
Gene3DG3DSA:4.10.280.107.3E-16129191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.824129179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-5133180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-8135185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MAESSFPLLE MDYQIPQYFT ELNQFHTFTQ VPPSNFFTTH DRFDPVFDPT HHGGVVVEEN  60
IKKRKWLSME DASSSMNNTN NNISSASDDQ SGCCNNRSRG GRKRVRSNHG DGEEEKLKEV  120
VHVRARRGQA TDSHSLAERV RRGKINEKLK CLQNIVPGCY KTMGMAVMLD EIINYVQSLQ  180
NQVDFLSMKL TAASTYYDFN AEEEATLQRA KDEGREMKEG YGAMFPLINM VSLTHTYG*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10009034
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020213827.11e-63transcription factor BEE 3
SwissprotQ8GWK73e-57BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A151TRN83e-62A0A151TRN8_CAJCA; Transcription factor BEE 3
STRINGLus100090340.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33603467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.11e-56BR enhanced expression 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]