PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10009008 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MYB | ||||||||
Protein Properties | Length: 887aa MW: 99926.2 Da PI: 8.3478 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30 | 1.2e-09 | 367 | 409 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 W +E++ll+ +v+ G ++W+ Ia+ +gk+Rt+ qc +r+q Lus10009008 367 WARQEEKLLLYYVQSKGIHNWSEIASLLGKKRTPFQCLERYQR 409 8899*************************************96 PP | |||||||
2 | Myb_DNA-binding | 42.9 | 1.1e-13 | 419 | 461 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eEd +l+ av ++G +W ++a t+ gRt+ qc +rw+k Lus10009008 419 EWTKEEDAQLKSAVCKFGESDWQSVATTLR-GRTGAQCSNRWLK 461 7*****************************.***********98 PP | |||||||
3 | Myb_DNA-binding | 49.2 | 1.2e-15 | 468 | 512 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W +eEd++l+ avk +G+++Wk++a+ ++ gR + qc++rw++ Lus10009008 468 KGNWKAEEDKRLKLAVKFFGPKDWKKVASFVP-GRKDVQCRERWHN 512 79******************************.***********98 PP | |||||||
4 | Myb_DNA-binding | 53.1 | 7.4e-17 | 520 | 564 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+WT eEd +l+ av+++G W++++++++ gR +++c rw + Lus10009008 520 RGAWTDEEDSRLKAAVEEHGHS-WSKVSHYVP-GRNDNDCMRRWKVL 564 89******************88.*********.***********865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.725 | 263 | 358 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.86 | 267 | 360 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-10 | 270 | 286 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.9E-10 | 330 | 371 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.95E-12 | 339 | 396 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 9.21 | 359 | 411 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.7E-7 | 363 | 413 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 1.1E-12 | 367 | 428 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-11 | 372 | 420 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.37E-19 | 397 | 465 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.905 | 412 | 462 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-9 | 416 | 465 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.83E-9 | 419 | 463 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-14 | 421 | 464 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.686 | 463 | 514 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-14 | 467 | 516 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.05E-25 | 468 | 561 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.1E-14 | 468 | 512 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-21 | 469 | 521 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.36E-12 | 470 | 512 | No hit | No description |
PROSITE profile | PS51294 | 24.267 | 515 | 569 | IPR017930 | Myb domain |
SMART | SM00717 | 9.2E-16 | 519 | 567 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-15 | 520 | 563 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.42E-11 | 522 | 565 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-17 | 522 | 567 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 887 aa Download sequence Send to blast |
MRTPEAENWG RLSDLTSDDE DDLDDALFND IEALREVCLK TGNTLGNTDN VCDDDEDNDD 60 GPSTSGRVVD SDSDEDDLEI LRSIQQRFMK SGKNYQALSP KPLCSIHPDT DDDDGEDDLE 120 MLVSLQRRFG TKGGIDANGG EIRSKRFEEE QTSIVTSEVK VSDEQLVGKT NAFRVVEDIQ 180 DTANNTANLL SERNLKDLQV SCRQNTGRSF AQGKNPRIQL ISAQSSISSK DAKGKDVKLS 240 PICSGPEENS HVPNYREALV KFPPSLERRK WEKSEDKNLK EGLKQQFQEI LFMEATDQFS 300 SSGHDGDTDS IIKSVENLEI TPEIMKKFLH KVDWNMVASR FVKGRSSPEC QARWLNSACP 360 DINNSGWARQ EEKLLLYYVQ SKGIHNWSEI ASLLGKKRTP FQCLERYQRS LNSRVLNKEW 420 TKEEDAQLKS AVCKFGESDW QSVATTLRGR TGAQCSNRWL KSLRLCGKGN WKAEEDKRLK 480 LAVKFFGPKD WKKVASFVPG RKDVQCRERW HNACSPSLNR GAWTDEEDSR LKAAVEEHGH 540 SWSKVSHYVP GRNDNDCMRR WKVLFPKEVK LLKEARKFRN AALITNFVDR EEERPALGLE 600 DFVTSPRLLP ESENVDQSGK SGRKRSNART KTRPNRTVKQ MQESLQAGGN GTADAGDAES 660 CGGSTAAGRK RRTLNRRRRT RKDHAQPPRE PSPDSICSPS RTKKVLLVYT RRKKGLDLKN 720 REANSSSEKD VEAPSSFNEV YTKGFGALRP HHRHEKDSHD VQEPWDNITL SSLRTSKKRK 780 RKLKIDDRSN IVVKDIGKAS YPPDDAQATS DSEATFSAEL QCRETSSHMS IDSSRSPPGS 840 NSVYSRKRKK IHGQAPVNQK HDDSKIDNAG ILRATSLDAC ESDVTS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 6e-30 | 333 | 570 | 4 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 6e-30 | 333 | 570 | 4 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 675 | 682 | RRRRTRKD |
2 | 776 | 781 | KKRKRK |
3 | 845 | 849 | RKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10009008 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10009008 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7441 | 33 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.2 | 1e-139 | myb domain protein 4r1 |
Link Out ? help Back to Top | |
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Phytozome | Lus10009008 |