PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10008804
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 180aa    MW: 20111.1 Da    PI: 10.2847
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10008804genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.51.8e-062772555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 h + Er RR++ ++++  L ++lP++     +K +K +i++ A++ I +L+
  Lus10008804 27 HMMSERLRREKEKEGYTSLLSILPSD-----TKKNKNAIVTGAMRRIEELE 72
                 7789*********************9.....8**************99985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-101483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.1632271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.29E-42672No hitNo description
Gene3DG3DSA:4.10.280.102.8E-62789IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-42877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MMEFQKTNWE FNGKKAGSSK QHSSFRHMMS ERLRREKEKE GYTSLLSILP SDTKKNKNAI  60
VTGAMRRIEE LEGYKQMLER RIMELEEAQL SLNHSRVAKK KVKIKVGNAT TSSGSGLGGS  120
SMLEVLYELK ALGAEPTTIK SKISHDQGFE AVMDVETQAD AEKKKKIVSR IPGSFVLES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10008804
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100088041e-127(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125722734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.11e-22bHLH family protein