PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10008626 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 101aa MW: 11400.9 Da PI: 10.0219 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.1 | 8.7e-05 | 29 | 62 | 22 | 55 |
HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Lr llP++ + + + iL++++ YI++L+ Lus10008626 29 KLRALLPHLNQRHPSRGQALKILKETCSYIRKLE 62 8*******8333333366678**********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.8E-6 | 27 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.28E-5 | 28 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 101 aa Download sequence Send to blast |
MSARSRRSSS SSRAQNLSED DIIMDLTLKL RALLPHLNQR HPSRGQALKI LKETCSYIRK 60 LEREVNELSG RLSALLDAVD SSNNHRDFDV DSIRTLLQQL * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10008626 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021677128.1 | 5e-23 | transcription factor PRE4-like | ||||
Swissprot | Q9LJX1 | 3e-16 | PRE5_ARATH; Transcription factor PRE5 | ||||
TrEMBL | A0A067K4V8 | 2e-20 | A0A067K4V8_JATCU; Uncharacterized protein | ||||
STRING | Lus10008626 | 1e-64 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10624 | 24 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28857.1 | 7e-17 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10008626 |