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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10008374 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | YABBY | ||||||||
Protein Properties | Length: 177aa MW: 20072.3 Da PI: 6.896 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 92 | 1.5e-28 | 7 | 50 | 116 | 159 |
YABBY 116 irPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 r PekrqrvPsaynrfikeeiqrik+snPdi+hreafs+aakn Lus10008374 7 LRAPEKRQRVPSAYNRFIKEEIQRIKTSNPDITHREAFSTAAKN 50 799****************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47095 | 8.12E-6 | 4 | 47 | IPR009071 | High mobility group box domain |
Pfam | PF04690 | 4.9E-27 | 5 | 50 | IPR006780 | YABBY protein |
CDD | cd00084 | 0.00132 | 15 | 42 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MKRRTDLRAP EKRQRVPSAY NRFIKEEIQR IKTSNPDITH REAFSTAAKN ILLYYGERIG 60 QTPSRGVPKH ITPDDSLGRV KGVEHSGQVS RVGYGVTPSH VGLSRKGKGI GQSSLDGRQS 120 HFHLLGHCPT TSMALDRVNV LGEEIRLMRE EMERGKQQVQ EDEEEQEDEE EDDFDY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10008374 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10008374 | 1e-127 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 5e-22 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10008374 |