PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10008316
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 534aa    MW: 58947.7 Da    PI: 5.6089
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10008316genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS310.14.9e-951315231374
         GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkf 93 
                  lv+lL+++Aea++   +++ la+ +L rl+el+sp+  ++m+Rlaa f+ AL+  l + +++ ++ +      +++  +++++aa++l++++sP++kf
  Lus10008316 131 LVHLLMAAAEALTGpaKSNDLARVILVRLKELVSPNHgSNMERLAAQFADALNFLLDGGGNKHSANVYHGGGCRDEygQADVMAAFQLLQDMSPYVKF 228
                  68**********97547788************8876549*****************996666655554333333333599****************** PP

         GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlva 183
                  +h+taNqaIleav +++r+Hi+D+di++G+QW++Llq+L sR+egpp  +lRiT++ +  s+      s  +++etg+rL  fA+++g pf+f+    
  Lus10008316 229 GHFTANQAILEAVTHDRRIHIVDYDIMEGIQWASLLQSLVSRKEGPPtpHLRITALTRGGSSnavnrrSIGTVQETGRRLVAFAASIGQPFSFHQCRL 326
                  *******************************************887666*******9866556788888999***********************999 PP

         GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...........sFlerflealeyysalfds 270
                  ++ e++++++ ++ +gEal+ n++l+l ++  +s ++     ++L+  + l+P++v+++e+e+  +++           +Fl rf+++l++ysa++ds
  Lus10008316 327 DSDESFRPSAVKLVRGEALVLNCMLHLPHFTYRSPKSVA---SFLNGARLLNPRLVTLAEEELGPTEKthtsghsgsgdDFLSRFMDTLHHYSAVYDS 421
                  9****************************9977776666...9*******************66544445667888888******************* PP

         GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpL 367
                  lea++p + ++r+ vEr++lg++i+  +a   + r  ++e+ ++W e+l++aGF+   +s  + +qaklll  ++ dgyrvee   + lvlgWk+r+L
  Lus10008316 422 LEAGFPMQGRARALVERVFLGPRISGSLARIYRGR--EKEEGGSWWEWLTAAGFRREGVSFANHCQAKLLLGLFN-DGYRVEEMgCNRLVLGWKSRRL 516
                  ******************************99984..456689********************************.******98578999******** PP

         GRAS 368 vsvSaWr 374
                  +s+S W+
  Lus10008316 517 LSASIWT 523
                  ******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.618105503IPR005202Transcription factor GRAS
PfamPF035141.7E-92131523IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MAAINGFHYH HDHLDLSSHT SSTTTTTRTT TTTTDDDTYK WDQGWSPVVD WEVLSGGHHD  60
DFHHLLIDSM LEDESSEDSA NGFSPAVTTP TAAVTTSGDD FSAENMMIVG EEEEEEEVEE  120
REEEDFKGLR LVHLLMAAAE ALTGPAKSND LARVILVRLK ELVSPNHGSN MERLAAQFAD  180
ALNFLLDGGG NKHSANVYHG GGCRDEYGQA DVMAAFQLLQ DMSPYVKFGH FTANQAILEA  240
VTHDRRIHIV DYDIMEGIQW ASLLQSLVSR KEGPPTPHLR ITALTRGGSS NAVNRRSIGT  300
VQETGRRLVA FAASIGQPFS FHQCRLDSDE SFRPSAVKLV RGEALVLNCM LHLPHFTYRS  360
PKSVASFLNG ARLLNPRLVT LAEEELGPTE KTHTSGHSGS GDDFLSRFMD TLHHYSAVYD  420
SLEAGFPMQG RARALVERVF LGPRISGSLA RIYRGREKEE GGSWWEWLTA AGFRREGVSF  480
ANHCQAKLLL GLFNDGYRVE EMGCNRLVLG WKSRRLLSAS IWTPPSVSDS ESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-501155264382Protein SCARECROW
5b3h_A4e-501155263381Protein SCARECROW
5b3h_D4e-501155263381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10008316
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021601913.10.0nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A2C9U1260.0A0A2C9U126_MANES; Uncharacterized protein
STRINGLus100083160.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-151GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]