PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10008197
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family G2-like
Protein Properties Length: 445aa    MW: 49011.4 Da    PI: 5.6487
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10008197genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.76.4e-34240294155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k r+rWtpeLHe+Fveav+qLGGse+AtPk +l+lm+++gLt++hvkSHLQkYR+
  Lus10008197 240 KSRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMNIEGLTIYHVKSHLQKYRT 294
                  68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.59237297IPR017930Myb domain
SuperFamilySSF466897.17E-18238294IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-31238296IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-24240294IPR006447Myb domain, plants
PfamPF002491.9E-10242293IPR001005SANT/Myb domain
PfamPF143794.5E-24325372IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MSSSFPVLRA PAGEKYPKLP DTCQFSAERE IMRNSVPQQA VPVGSGSGAV GPILSSSSGF  60
VNEMHVTSVS PQGKHSRNSP FISESSSARG SLPPLLSSSH AEVHSSSLVS HSTESKNIGW  120
STDSLPGFLD DFPENVSIQN GQEESTGVIA SEEHVKRLDW QWADQWISVD DTLDTDWNEI  180
LSEVNATESK QKEHITKQMP VPQTSSSNSV PETSAQPAQA AHSGEVISVA TPLSSVTSIK  240
SRMRWTPELH EAFVEAVNQL GGSERATPKG VLKLMNIEGL TIYHVKSHLQ KYRTARYKPE  300
PSEESSEKKL TSIDDMKSLD LKTSMGITDA LRMQMEVQKQ LHEQLEIQRN LQLRIEEQGR  360
YLQKMFEKQK KMEEERTKRP SSSPIDDPKS SDKLEATGID GTKSQANETS NADRNNKDTS  420
LDDLESSPTQ AKRPRTDQTS PRAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-30240298260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-30240298260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-30240298260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-30240298260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-30240298260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-30240298260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-30240298260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-30240298260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00532DAPTransfer from AT5G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10008197
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024439691.11e-163protein PHR1-LIKE 1 isoform X1
RefseqXP_024447350.11e-163protein PHR1-LIKE 1 isoform X1
TrEMBLB9S7M41e-160B9S7M4_RICCO; DNA binding protein, putative
STRINGLus100081970.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15123498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.29e-82G2-like family protein