PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10008141
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Trihelix
Protein Properties Length: 401aa    MW: 44511.8 Da    PI: 5.4757
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10008141genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix445.7e-1466153186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W++  + +Li+a  e+  +l+rg lk+++W+ev++++ +++ +    ++ +qCk++++ ++k+yk +k+    +  +  s +p+++++e
  Lus10008141  66 CWSEGATAVLIDAWAERYVELSRGILKQHHWKEVADVVsSREDYikpPKTDIQCKNRIDTVKKKYKSEKAKIDAG--GGPSLWPFYHRIE 153
                  7*************************************83344423367889*******************9997..67778******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.1E-2364155No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDDDAGDDEI QSPRSPSPYN GRISVTVAAA APPVSPPQRE PSPSAAYHVL ALAAVPKTVN  60
NGREDCWSEG ATAVLIDAWA ERYVELSRGI LKQHHWKEVA DVVSSREDYI KPPKTDIQCK  120
NRIDTVKKKY KSEKAKIDAG GGPSLWPFYH RIEQLIGLNP TLASRKPSGT TKTPVSGSVS  180
GRVPTGIPVG KRSSSQRRQQ PYQFGNLNRM NNGRQKVKTP SRKRGAAAML MDSSSEEEEE  240
EEEEEEEEEE EEETVPFRNY DYGFPAASKK RRMEQNGEVK KEEGGGWGDS IRMLTASIVK  300
LGEAYEQTEK KKLEQVVEME KTRMKFMQEL ELQRMQFFMK TQMEISQLNS RRRIRRQSPS  360
PAPPPPPPPG GGIGIVAAAA AAASPNDDDS DDELKEELSE *
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10008141
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021637714.11e-101trihelix transcription factor ASIL2-like
SwissprotQ9LJG83e-86ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A2C9UYM35e-97A0A2C9UYM3_MANES; Uncharacterized protein
STRINGLus100081410.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79193044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.18e-51sequence-specific DNA binding transcription factors