PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10007974

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bHLH

Protein Properties

Length: 564aa MW: 60951.6 Da PI: 8.5571

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10007974	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.8	1.7e-12	291	338	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r +h++ E+rRR++iN++ + Lre++P+ ++K +Ka+ L +++eYI+ L Lus10007974 291 RSKHSATEQRRRSKINDR-QMLREIIPHG----DQKRDKASFLLEVIEYIQFL 338 889*************.9****7....7***************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.7E-18	286	347	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-13	288	347	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.242	289	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.82E-12	291	343	No hit	No description
Pfam	PF00010	5.3E-10	291	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-8	295	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009742	Biological Process	brassinosteroid mediated signaling pathway
GO:1902448	Biological Process	positive regulation of shade avoidance
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 564 aa Download sequence Send to blast
MVLDGLFLHF LESFCSGFLK SETDLWSAGR KRKPTLDFLS LCSHSSAAAA PQQQDPSRPS 60 SSQGVYLKTH DFLQPLERGG GTAAKEETEA SEVSMTPKSL PPQAPQTSVE HILPGGIGTY 120 SISHISYYNN NQQRVPKPEG SSVFVGGQTS SAEKNEENSN CSSYNTGGGG SGFTLWEESA 180 LKKGKTGKEN FADRSNVVRE SPVKTGGQWT TSERPSQSST NHHSNHFSSL SPPDQPSGLK 240 RQSFMDMMKS AKDYEDLDDD DDLVLKKESP PAELIVKVDG KRSDQKANTP RSKHSATEQR 300 RRSKINDRQM LREIIPHGDQ KRDKASFLLE VIEYIQFLHE KVHKYEGSSY QGWNLDPEIK 360 LSPWKSNNRT DESHVEAKKV SISTAAIPGG VLQNPAGSDT SSATTPKAAA MAFPMSLQPN 420 IFNPARAGCS SASPQVTSDV INGGAMRQAS LSRSGTGNGF DGGDHKLKEH GLNVDGGMIS 480 ISSAYSRGLL SSLTEALRSS GVDLSEAKIS VQVEVGKGAK SNSAPPSITN KGERGIQFRS 540 NQEEPSQFFK KLKTGGLEKK PTN*

Sequence ? help Back to Top

Protein Sequence Length: 564 aa Download sequence Send to blast

MVLDGLFLHF LESFCSGFLK SETDLWSAGR KRKPTLDFLS LCSHSSAAAA PQQQDPSRPS  60
SSQGVYLKTH DFLQPLERGG GTAAKEETEA SEVSMTPKSL PPQAPQTSVE HILPGGIGTY  120
SISHISYYNN NQQRVPKPEG SSVFVGGQTS SAEKNEENSN CSSYNTGGGG SGFTLWEESA  180
LKKGKTGKEN FADRSNVVRE SPVKTGGQWT TSERPSQSST NHHSNHFSSL SPPDQPSGLK  240
RQSFMDMMKS AKDYEDLDDD DDLVLKKESP PAELIVKVDG KRSDQKANTP RSKHSATEQR  300
RRSKINDRQM LREIIPHGDQ KRDKASFLLE VIEYIQFLHE KVHKYEGSSY QGWNLDPEIK  360
LSPWKSNNRT DESHVEAKKV SISTAAIPGG VLQNPAGSDT SSATTPKAAA MAFPMSLQPN  420
IFNPARAGCS SASPQVTSDV INGGAMRQAS LSRSGTGNGF DGGDHKLKEH GLNVDGGMIS  480
ISSAYSRGLL SSLTEALRSS GVDLSEAKIS VQVEVGKGAK SNSAPPSITN KGERGIQFRS  540
NQEEPSQFFK KLKTGGLEKK PTN*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00498	DAP	Transfer from AT5G08130	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10007974

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002514597.1	1e-175	transcription factor BIM1 isoform X1
Refseq	XP_015572073.1	1e-175	transcription factor BIM1 isoform X1
Swissprot	Q9LEZ3	1e-105	BIM1_ARATH; Transcription factor BIM1
TrEMBL	B9RLH8	1e-174	B9RLH8_RICCO; Transcription factor BIM1, putative
STRING	Lus10007974	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7252	31	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	4e-92	bHLH family protein

Link Out ? help Back to Top
Phytozome	Lus10007974

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]