PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10007799
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 125aa    MW: 13179.7 Da    PI: 10.6813
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10007799genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-193987355
          AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++GVr +  +g+Wv+eIr+p++   + r++lg+f+t+e+Aa+a++ a+++++g
  Lus10007799 39 FRGVRKRQ-WGKWVSEIREPKK---KSRIWLGTFDTPEMAARAHDVAALAIKG 87
                 8****888.**********854...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-323897IPR001471AP2/ERF domain
SMARTSM003801.6E-3638101IPR001471AP2/ERF domain
PROSITE profilePS5103223.4993895IPR001471AP2/ERF domain
PfamPF008474.6E-133987IPR001471AP2/ERF domain
PRINTSPR003677.8E-113950IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-223996IPR016177DNA-binding domain
CDDcd000185.04E-323995No hitNo description
PRINTSPR003677.8E-116177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MEPTSSSSSS SSSSSSPSSP DSHSSDVKAG SSDLQFRSFR GVRKRQWGKW VSEIREPKKK  60
SRIWLGTFDT PEMAARAHDV AALAIKGNSA LLNFPKEAHL LPRPASSSPK DVQAAAALAG  120
ALDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-20391001577Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10007799
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022025200.12e-44ethylene-responsive transcription factor ERF039-like
RefseqXP_022856866.15e-44ethylene-responsive transcription factor TINY-like
SwissprotQ8LBQ75e-40ERF34_ARATH; Ethylene-responsive transcription factor ERF034
SwissprotQ9SUK88e-41ERF39_ARATH; Ethylene-responsive transcription factor ERF039
TrEMBLA0A251RPK34e-43A0A251RPK3_HELAN; Putative DNA-binding domain-containing protein
STRINGLus100077994e-82(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.11e-41ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]