PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10007513

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

G2-like

Protein Properties

Length: 319aa MW: 35197.7 Da PI: 10.2022

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10007513	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98	6.7e-31	2	55	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +F++av++LGG+e+AtPk +l+lm++kgL+++hvkSHLQ+YR+ Lus10007513 2 PRLRWTPDLHLSFLQAVDRLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 55 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.76	1	58	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-27	1	56	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.66E-14	2	56	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.7E-23	2	57	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-8	3	54	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MPRLRWTPDL HLSFLQAVDR LGGQERATPK LVLQLMNIKG LSIAHVKSHL QMYRSKKFDD 60 PNQGNAQGVL FQGRDSHGYN LSQLPMLQRF NYGPSSPANS RYGNYSSSWR RGHNICGTNY 120 IGGGRLATSS LYGYNNHKPF TTKYSSCDSP NNNINLPSSL MLKGIPTSTK STSTTHPNHS 180 STFENTAKFL FHRWPPQILA KPASPALEES TTNDIINLGG FKRKLMSMRP VQSGDHLDLE 240 LSLKVSKQAK VDMGGNDYAV NVVDLDPESS LSLSLSSSSS SKISEVVRRD NKYNSSVVMN 300 EGVDSKRARM ASTLDLTL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-19	3	58	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-19	3	58	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-19	3	58	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-19	3	58	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-19	3	58	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-19	3	58	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-19	3	58	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-19	3	58	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-19	3	58	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-19	3	58	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-19	3	58	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-19	3	58	4	59	Protein PHOSPHATE STARVATION RESPONSE 1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10007513

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10007513	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2378	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	5e-41	G2-like family protein

Link Out ? help Back to Top
Phytozome	Lus10007513