PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10007279
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family G2-like
Protein Properties Length: 151aa    MW: 17121.2 Da    PI: 10.127
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10007279genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.71.8e-3048101255
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  prl+Wtp LH++Fv+ave+LG +++AtPk++l++m+vkgLt++hvkSHLQ+YR 
  Lus10007279  48 PRLKWTPHLHSSFVRAVEKLGEQHRATPKSVLQFMDVKGLTISHVKSHLQMYRN 101
                  8****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-2844102IPR009057Homeodomain-like
PROSITE profilePS5129413.64544104IPR017930Myb domain
SuperFamilySSF466894.03E-1548102IPR009057Homeodomain-like
TIGRFAMsTIGR015578.6E-2448103IPR006447Myb domain, plants
PfamPF002493.4E-849100IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MAEKEMEDGR DVKKRYLDLN QEAAGSSEGG GGEGKERVSR RYVRSTLPRL KWTPHLHSSF  60
VRAVEKLGEQ HRATPKSVLQ FMDVKGLTIS HVKSHLQMYR NKKLENQGKG ETESNLHFHI  120
RTELTESSCR KQHSDTSSNV ETNTRKLSSD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-1849103458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-1849103458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-1849103458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-1849103458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-1849103458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-1849103458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-1849103458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-1849103458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10007279
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022732211.15e-33putative Myb family transcription factor At1g14600
RefseqXP_022848016.17e-33probable transcription factor KAN3 isoform X1
RefseqXP_022848017.15e-33two-component response regulator ARR18-like isoform X2
RefseqXP_022848018.15e-33two-component response regulator ARR18-like isoform X2
RefseqXP_022848019.15e-33two-component response regulator ARR18-like isoform X3
RefseqXP_022848020.15e-33two-component response regulator ARR18-like isoform X3
RefseqXP_022848022.15e-33two-component response regulator ARR18-like isoform X3
TrEMBLA0A200QT362e-31A0A200QT36_9MAGN; SANT/Myb domain
STRINGLus100072791e-107(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55393353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.13e-30G2-like family protein