PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10007273
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Trihelix
Protein Properties Length: 310aa    MW: 34685.7 Da    PI: 9.0265
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10007273genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix513.9e-1641131186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W+++ + +L+ea  ++  +l+rg+l++++W++v++++       ++ +r+ +qCk++ + ++k+yk++k++    +    s++p+fd+l+
  Lus10007273  41 CWSEEATATLVEAWGNRYLELNRGNLRQKDWKDVADAVnavhgLTKKTHRTDVQCKNRVDTVKKKYKAEKARLTASNGAIPSSWPFFDRLD 131
                  7**************************************99999999***************************99999999*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.5E-2639133No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGDLITADSG TPNPTSATTR RAPPPTPTPA TTRPVPIRED CWSEEATATL VEAWGNRYLE  60
LNRGNLRQKD WKDVADAVNA VHGLTKKTHR TDVQCKNRVD TVKKKYKAEK ARLTASNGAI  120
PSSWPFFDRL DHLIGPNFSS AAASGKKSTP TSQPQSHQSP SSLSLSPPVA LPLTSYRKPX  180
XXXXXXXXXX XXXXXXAERD AVRNHSAMGA RAAAAAAAES ESEEEEMEME NEKDEEGEGV  240
RRLARAIERF GDVYERVEGE KLRQMIDLEK QRMKFAKDLE MERMRIFTET QIQLERIKKG  300
KRSNGERDY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10007273
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021599529.11e-108trihelix transcription factor ASIL1-like
TrEMBLA0A2P2KXN51e-107A0A2P2KXN5_RHIMU; Uncharacterized protein MANES_17G056000
STRINGLus100072730.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.15e-40sequence-specific DNA binding transcription factors