PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10007132 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | G2-like | ||||||||
Protein Properties | Length: 325aa MW: 34899.7 Da PI: 6.866 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108.5 | 3.4e-34 | 51 | 105 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt+eLH+rFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl Lus10007132 51 KPRLRWTTELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 105 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-33 | 48 | 107 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.849 | 48 | 108 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.69E-17 | 50 | 107 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-24 | 51 | 106 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.6E-8 | 53 | 104 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 8.2E-27 | 152 | 198 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0010628 | Biological Process | positive regulation of gene expression | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MYSALHSMPL DGSILGGGGG GGAAGHVDYQ RSLDGTNLPG DACLVLTTDP KPRLRWTTEL 60 HDRFVDAVTQ LGGPDKATPK TIMRTMGVKG LTLYHLKSHL QKYRLGRQSC KETTESSKDV 120 GIAASIAESQ DTGSSTSTSS RMAAQDLNDG YQVTEALRVQ MEVQRRLHEQ LEVQRRLQLR 180 IEAQGKYLQS ILEKACKALN DQAVATVGLE AAREELSELA IKVSNECQGM APMDTIKMPT 240 LPELAAALES RSASNMPARI GDCSTESCLT SIGSPVSPMG MSPQAAAAVA AMKKRPRSVF 300 GNGDSLLFDG SMRQEVEWMM HNMA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 4e-19 | 51 | 107 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-19 | 51 | 107 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-19 | 51 | 107 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-19 | 51 | 107 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10007132 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006369801.1 | 0.0 | protein PHR1-LIKE 3 | ||||
Swissprot | Q8LAJ7 | 1e-136 | PHL3_ARATH; Protein PHR1-LIKE 3 | ||||
TrEMBL | U5GS23 | 0.0 | U5GS23_POPTR; Uncharacterized protein | ||||
STRING | Lus10007132 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13367 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13640.1 | 1e-120 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10007132 |
Publications ? help Back to Top | |||
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