PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10007132
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family G2-like
Protein Properties Length: 325aa    MW: 34899.7 Da    PI: 6.866
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10007132genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.53.4e-3451105155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  kprlrWt+eLH+rFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl
  Lus10007132  51 KPRLRWTTELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 105
                  79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-3348107IPR009057Homeodomain-like
PROSITE profilePS5129411.84948108IPR017930Myb domain
SuperFamilySSF466892.69E-1750107IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-2451106IPR006447Myb domain, plants
PfamPF002491.6E-853104IPR001005SANT/Myb domain
PfamPF143798.2E-27152198IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0010628Biological Processpositive regulation of gene expression
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MYSALHSMPL DGSILGGGGG GGAAGHVDYQ RSLDGTNLPG DACLVLTTDP KPRLRWTTEL  60
HDRFVDAVTQ LGGPDKATPK TIMRTMGVKG LTLYHLKSHL QKYRLGRQSC KETTESSKDV  120
GIAASIAESQ DTGSSTSTSS RMAAQDLNDG YQVTEALRVQ MEVQRRLHEQ LEVQRRLQLR  180
IEAQGKYLQS ILEKACKALN DQAVATVGLE AAREELSELA IKVSNECQGM APMDTIKMPT  240
LPELAAALES RSASNMPARI GDCSTESCLT SIGSPVSPMG MSPQAAAAVA AMKKRPRSVF  300
GNGDSLLFDG SMRQEVEWMM HNMA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-1951107157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-1951107157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-1951107157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-1951107157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10007132
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006369801.10.0protein PHR1-LIKE 3
SwissprotQ8LAJ71e-136PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBLU5GS230.0U5GS23_POPTR; Uncharacterized protein
STRINGLus100071320.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133672126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.11e-120G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]