PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10007049
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 286aa    MW: 31509.6 Da    PI: 9.3937
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10007049genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.3e-1190141154
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  ++++h  +E++RR+++   ++ Lr+llP       ++K s ++   +A +YIk+ 
  Lus10007049  90 KKMMHRDVEKQRRQEMSGLYSSLRSLLPFdY---LKGKRSVSDHIHQAANYIKHQ 141
                  6899*************************66...9******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.78E-987146No hitNo description
SuperFamilySSF474596.28E-1387163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.44389141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-890141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-891157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDHNSPPSNF IFRPPPPPPL AVVSPNIDAN NHQQPPVLSS GHVRINDTIM VAPARSRRRK  60
STLVAFVGEE EKEEGAKGKE EEGKEDRKMK KMMHRDVEKQ RRQEMSGLYS SLRSLLPFDY  120
LKGKRSVSDH IHQAANYIKH QEGKIEELSC KRDQLKNTYI PTTTGNSSAS ASSSSTSNLS  180
ANNYNFHDRS KSAVIINVTT CLIGIEVTLE VCEFHMGVST IVGALAGEGF NIVSCISARV  240
NHRMVHTIKA EACDGRSIDA AQLQEKLRNS VVLRRSAPDK TAGSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15560SRRRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10007049
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100070490.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62975.11e-35bHLH family protein