PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10006951 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 225aa MW: 25594.4 Da PI: 6.3121 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41 | 3.4e-13 | 57 | 99 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er+RR+++N++++ Lr ++P+ +K++Ka+i + A++YI++L Lus10006951 57 VSERNRRKKLNERLFALRAVVPNI-----TKMDKASIIKDAINYIQEL 99 57*********************7.....7****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.602 | 50 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.63E-18 | 51 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.87E-12 | 53 | 104 | No hit | No description |
SMART | SM00353 | 6.3E-15 | 56 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-17 | 56 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-10 | 57 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MEPIDNIGEE YHNYWETKMF LHNEELDSWA MDEAFSGYYD SSSPDGAASS AASKNIVSER 60 NRRKKLNERL FALRAVVPNI TKMDKASIIK DAINYIQELH EQERRIQAEI AELELESGGF 120 GGGRKKKSLK KGIYEMDLEE LPLLLRSKKK KVDDRFYDSS PIELLELRVA YMGEKTVLVS 180 LTCGKRSDTM VRLCEMFESL KLKVITANIT TVAGRLLKTV FVEV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 7e-14 | 55 | 119 | 9 | 80 | Transcription factor MYC2 |
5gnj_B | 7e-14 | 55 | 119 | 9 | 80 | Transcription factor MYC2 |
5gnj_E | 7e-14 | 55 | 119 | 9 | 80 | Transcription factor MYC2 |
5gnj_F | 7e-14 | 55 | 119 | 9 | 80 | Transcription factor MYC2 |
5gnj_G | 7e-14 | 55 | 119 | 9 | 80 | Transcription factor MYC2 |
5gnj_I | 7e-14 | 55 | 119 | 9 | 80 | Transcription factor MYC2 |
5gnj_M | 7e-14 | 55 | 119 | 9 | 80 | Transcription factor MYC2 |
5gnj_N | 7e-14 | 55 | 119 | 9 | 80 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10006951 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011017674.1 | 1e-120 | PREDICTED: transcription factor bHLH35-like | ||||
Refseq | XP_021634034.1 | 1e-120 | transcription factor bHLH35-like isoform X3 | ||||
Refseq | XP_021634035.1 | 1e-120 | transcription factor bHLH35-like isoform X4 | ||||
Swissprot | Q2HIV9 | 4e-79 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A2C9UP10 | 1e-119 | A0A2C9UP10_MANES; Uncharacterized protein | ||||
STRING | Lus10006951 | 1e-164 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3389 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 6e-69 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10006951 |