PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10006587
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 393aa    MW: 41287.1 Da    PI: 6.4058
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10006587genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.3e-09240284554
                  HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  Lus10006587 240 HSIAERLRRERIAERMKALQELVPTvN------KTDRAAMLDEIVDYVKFL 284
                  99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.91E-11233289No hitNo description
SuperFamilySSF474593.27E-15233295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.361235284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-15237297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-7240284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MAGNPTPDGL GDDFLEQILA AQPGYGGGGG GGGGGGGGGE GMMMMGLQLG SGGGGGGMRG  60
LNSNNNNNNN NNNMGGRMPL GLNLEHHGFM RHPPEDQSGG GGVGGLDSGN LNNNNAPSSS  120
ATSGMSERDS VHMTGLFPAF GQLQSQSIRA PPPQLHHHHH HHQHFGFGPE GVLLGFGQMY  180
GEIQFLWAHQ NLSLLLSTPT TDNQFQSQPT PGPGQLPAGL QPPSIRPRVR ARRGQATDPH  240
SIAERLRRER IAERMKALQE LVPTVNKTDR AAMLDEIVDY VKFLRLQVKV LSMSRLGAAG  300
AVAQLVADVP VSSVEGEGGG GEEQAWEKWS NDGTEQQVAK LMEEDVGGAM QFLQSKALCI  360
MPISLASAIF RSHPPPPDPS STLIKPESNP HS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244249RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10006587
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021650937.11e-140transcription factor UNE12-like
TrEMBLA0A2C9VFZ71e-137A0A2C9VFZ7_MANES; Uncharacterized protein
STRINGLus100065870.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112053239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03040.22e-63bHLH family protein