PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10006587 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 393aa MW: 41287.1 Da PI: 6.4058 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.5 | 1.3e-09 | 240 | 284 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++L + v+Y+k L Lus10006587 240 HSIAERLRRERIAERMKALQELVPTvN------KTDRAAMLDEIVDYVKFL 284 99***********************55......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.91E-11 | 233 | 289 | No hit | No description |
SuperFamily | SSF47459 | 3.27E-15 | 233 | 295 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.361 | 235 | 284 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.6E-15 | 237 | 297 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.7E-7 | 240 | 284 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-11 | 241 | 290 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MAGNPTPDGL GDDFLEQILA AQPGYGGGGG GGGGGGGGGE GMMMMGLQLG SGGGGGGMRG 60 LNSNNNNNNN NNNMGGRMPL GLNLEHHGFM RHPPEDQSGG GGVGGLDSGN LNNNNAPSSS 120 ATSGMSERDS VHMTGLFPAF GQLQSQSIRA PPPQLHHHHH HHQHFGFGPE GVLLGFGQMY 180 GEIQFLWAHQ NLSLLLSTPT TDNQFQSQPT PGPGQLPAGL QPPSIRPRVR ARRGQATDPH 240 SIAERLRRER IAERMKALQE LVPTVNKTDR AAMLDEIVDY VKFLRLQVKV LSMSRLGAAG 300 AVAQLVADVP VSSVEGEGGG GEEQAWEKWS NDGTEQQVAK LMEEDVGGAM QFLQSKALCI 360 MPISLASAIF RSHPPPPDPS STLIKPESNP HS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 244 | 249 | RLRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10006587 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021650937.1 | 1e-140 | transcription factor UNE12-like | ||||
TrEMBL | A0A2C9VFZ7 | 1e-137 | A0A2C9VFZ7_MANES; Uncharacterized protein | ||||
STRING | Lus10006587 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11205 | 32 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03040.2 | 2e-63 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10006587 |