PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10006446
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ARR-B
Protein Properties Length: 434aa    MW: 48796.2 Da    PI: 6.3948
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10006446genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.91.3e-24196249155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Lus10006446 196 KARVVWSVDLHQKFVKAVNQI-GYDKVGPKKILDLMNVPWLTRENVASHLQKYRL 249
                  68*******************.9*******************************8 PP
2Response_reg81.72.3e-27201281109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ +++l+++l+k  y ev+++  +++al++l+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga 
   Lus10006446  20 VLVVDDDPTWLKILEKMLRKCSY-EVTTCGLARDALNKLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGAC 114
                   89*********************.***************999999**********************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ ++el++
   Lus10006446 115 DYLLKPIRMKELRN 128
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521724.7E-3617141IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.4E-4517141No hitNo description
SMARTSM004482.8E-3218130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011044.16319134IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.0E-2420129IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.73E-3121134No hitNo description
Gene3DG3DSA:1.10.10.607.2E-28194253IPR009057Homeodomain-like
SuperFamilySSF466892.51E-17194253IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-22196249IPR006447Myb domain, plants
PfamPF002494.2E-7198248IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MENNGHSSPR TDAFPAGLRV LVVDDDPTWL KILEKMLRKC SYEVTTCGLA RDALNKLRER  60
KDGYDIVISD VNMPDMDGFK LLEHVGLEMD LPVIMMSVDG ETSRVMKGVQ HGACDYLLKP  120
IRMKELRNIW QHVLRKRIHE VRDIESFDTG GIESSTIQMS DDAHLFFCGG DDFSSMKRRK  180
DHYDDNNDTS SSSTKKARVV WSVDLHQKFV KAVNQIGYDK VGPKKILDLM NVPWLTRENV  240
ASHLQKYRLY LSRLPKDSSD QKTSIGSLKY SDSPSSNAFL FNVNYGIPSS TLVDRKTVSS  300
ATAGRKRALT VDIPDTHIPT KAARTDLGQT FGSSQAPYIT QHQCVSGESG CIPGFQCSQR  360
RQNLGLLSPY PVIDEDLQLF LLQGGLQNMD FPPEYFDHHP GFVSEDAMSL YDAARFDYDP  420
TEHLVIDQGL FIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-18192254163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10006446
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002515016.21e-155two-component response regulator ARR11
SwissprotQ5N6V81e-126ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLB9RMP71e-154B9RMP7_RICCO; Two-component response regulator
STRINGLus100064460.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-125response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]