PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10006369
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 501aa    MW: 55340 Da    PI: 5.7692
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10006369genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.53.6e-1291474991356
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l+++L++cA+avs++d+  aq+l+ +l++++s +g+p+qRl ay++e+L ar+++s+s+++kal++++ +   s++ l+++++++ev+P+lkf+++ a
  Lus10006369 147 LKQVLVACAKAVSENDQLIAQWLIDELRNMVSVSGEPIQRLGAYMLEGLVARMSSSGSSICKALRCKDPA---SADLLSYMHILYEVCPYLKFGYMSA 241
                  5799*****************************************************************9...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N aI ea++ge+rvHi+Df+i+qG QW++L+qa+a+Rp+gpp +RiTgv++++s   +   l+ +g+rL+k+A++++vpfef++ +a +  ++++e+L
  Lus10006369 242 NGAIAEAMKGENRVHIVDFQIGQGSQWISLIQAFAARPGGPPFIRITGVDDSTSAyaRGGGLNIVGKRLSKLAKSFKVPFEFHA-AALNGCEVQVENL 338
                  ***************************************************998899999************************.899********** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +++pgEalaVn++++lh+++desvs+e++rd++L+lvk+lsPkvv++veqea++n++ F+ rfle+l+yy+a+f+s++++l r++++ri++E+++l++
  Lus10006369 339 EIRPGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKGLSPKVVTLVEQEANTNTAAFFPRFLETLDYYTAMFESMDVTLQRDHKDRISIEQHCLAK 436
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356
                  ++vnv+aceg er+erhe l+kW++r+++aGF+p pls+ +++++k+ll++++++ yr+ee+ g
  Lus10006369 437 DVVNVIACEGGERVERHELLGKWKSRFSMAGFSPCPLSSLVNATIKTLLANYSKQ-YRLEEKAG 499
                  *****************************************************66.****9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.849121498IPR005202Transcription factor GRAS
PfamPF035141.2E-126147499IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MSGGLYYQPL QEFEANYMPQ FQNLAHQLCY NGSSSQATHF PFQTEQYCTL ESSSLNGTTY  60
AAIYNNFSPN GSPMSQHESP ISSSCITDDA NDIKHKLREL ETAMLGPDSD NFVMSMDGRT  120
VQEGIKIESP EIDCLREIMG AISRGELKQV LVACAKAVSE NDQLIAQWLI DELRNMVSVS  180
GEPIQRLGAY MLEGLVARMS SSGSSICKAL RCKDPASADL LSYMHILYEV CPYLKFGYMS  240
ANGAIAEAMK GENRVHIVDF QIGQGSQWIS LIQAFAARPG GPPFIRITGV DDSTSAYARG  300
GGLNIVGKRL SKLAKSFKVP FEFHAAALNG CEVQVENLEI RPGEALAVNF AFMLHHMPDE  360
SVSTENHRDR LLRLVKGLSP KVVTLVEQEA NTNTAAFFPR FLETLDYYTA MFESMDVTLQ  420
RDHKDRISIE QHCLAKDVVN VIACEGGERV ERHELLGKWK SRFSMAGFSP CPLSSLVNAT  480
IKTLLANYSK QYRLEEKAGA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-591494936348GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10006369
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021675700.10.0scarecrow-like transcription factor PAT1
RefseqXP_021675701.10.0scarecrow-like transcription factor PAT1
RefseqXP_021675702.10.0scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A067KCD60.0A0A067KCD6_JATCU; GRAS20 protein
STRINGLus100063690.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]