PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10006322

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

GRAS

Protein Properties

Length: 531aa MW: 59071.4 Da PI: 4.9305

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10006322	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	407.4	1.4e-124	143	515	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 lv+l+++c+ea+ s++ ++++++++l elasp+g+p+ Rl ay+teALa r++r ++++++ +p++ + + ++++ +al++ ++vsPi+kf h+ta Lus10006322 143 LVSLITSCVEAIGSRNVVMVNHFISKLGELASPKGSPISRLSAYYTEALALRVTRIWPQVFHLATPRDVD-RVEDDTGTALRIMNQVSPIPKFIHFTA 239 67899******************************************************999888886.67899999*************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 N+ +l+a+eg+++vHiiDfdi+qGlQWp+++q+LasR ++p ++RiTgvg+ sk+ l+etg+rL+ fAe+l++pfef++ v++rled++l++L+v Lus10006322 240 NEVLLRAFEGKDKVHIIDFDIKQGLQWPSFFQSLASRCNPPSHVRITGVGE----SKQDLNETGDRLSGFAEALNLPFEFHP-VVDRLEDVRLWMLHV 332 ***********************************************....9**********************.7********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgre 293 k+gE++aVn+ +q+h++l ++ ++ ++++ l+ks++P v+v+eqea+hn++s+ r++++l+yysa+fds+ + lp es rik+E++ ++re Lus10006322 333 KEGESVAVNCLFQMHKILYDTNGVAL--RDFMGLIKSTNPVTVIVAEQEAEHNGSSLESRVCNSLRYYSAVFDSIdSGLLPLESPVRIKMEEM-FARE 427 **************99888877..99*****************************************666789999*****. PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrve.......eesgslvlgWkdrpLvsvSaW 373 i+nvv+ceg +r+erhe++ekW++ +e+ GF++v ++e++ q ++ll++++s g y v ee +l+l+W ++pL++vSaW Lus10006322 428 IRNVVSCEGIDRVERHEKFEKWKNLMEQGGFRSVGITEREFLQGQMLLKMYSSGGnYGVMkqeqqqgEEALALTLTWLGEPLYTVSAW 515 ************************************************6655777633343333355678************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	59.829	117	488	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.8E-122	143	515	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence Send to blast
MTSKSDNDVH EGQKFWFQPN FQVPFSLTCS GEDERVCYIP SEVISPPRPL SNNPWVDSVI 60 TQITDLGGKD GEGSQRRPGK EASGSSSTSS DSDSLGLRLS ERNPEEHEVG NGSRNPHHPQ 120 HNAATMEAVG EEDQDGEVRG LELVSLITSC VEAIGSRNVV MVNHFISKLG ELASPKGSPI 180 SRLSAYYTEA LALRVTRIWP QVFHLATPRD VDRVEDDTGT ALRIMNQVSP IPKFIHFTAN 240 EVLLRAFEGK DKVHIIDFDI KQGLQWPSFF QSLASRCNPP SHVRITGVGE SKQDLNETGD 300 RLSGFAEALN LPFEFHPVVD RLEDVRLWML HVKEGESVAV NCLFQMHKIL YDTNGVALRD 360 FMGLIKSTNP VTVIVAEQEA EHNGSSLESR VCNSLRYYSA VFDSIDSGLL PLESPVRIKM 420 EEMFAREIRN VVSCEGIDRV ERHEKFEKWK NLMEQGGFRS VGITEREFLQ GQMLLKMYSS 480 GGNYGVMKQE QQQGEEALAL TLTWLGEPLY TVSAWIPVDI AGSSSSFSQP *

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence Send to blast

MTSKSDNDVH EGQKFWFQPN FQVPFSLTCS GEDERVCYIP SEVISPPRPL SNNPWVDSVI  60
TQITDLGGKD GEGSQRRPGK EASGSSSTSS DSDSLGLRLS ERNPEEHEVG NGSRNPHHPQ  120
HNAATMEAVG EEDQDGEVRG LELVSLITSC VEAIGSRNVV MVNHFISKLG ELASPKGSPI  180
SRLSAYYTEA LALRVTRIWP QVFHLATPRD VDRVEDDTGT ALRIMNQVSP IPKFIHFTAN  240
EVLLRAFEGK DKVHIIDFDI KQGLQWPSFF QSLASRCNPP SHVRITGVGE SKQDLNETGD  300
RLSGFAEALN LPFEFHPVVD RLEDVRLWML HVKEGESVAV NCLFQMHKIL YDTNGVALRD  360
FMGLIKSTNP VTVIVAEQEA EHNGSSLESR VCNSLRYYSA VFDSIDSGLL PLESPVRIKM  420
EEMFAREIRN VVSCEGIDRV ERHEKFEKWK NLMEQGGFRS VGITEREFLQ GQMLLKMYSS  480
GGNYGVMKQE QQQGEEALAL TLTWLGEPLY TVSAWIPVDI AGSSSSFSQP *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-68	127	517	5	380	Protein SCARECROW
5b3h_A	3e-68	127	517	4	379	Protein SCARECROW
5b3h_D	3e-68	127	517	4	379	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10006322

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022719972.1	0.0	scarecrow-like protein 28
Swissprot	Q9CAN3	0.0	SCL28_ARATH; Scarecrow-like protein 28
TrEMBL	B9GW73	0.0	B9GW73_POPTR; GRAS family protein
STRING	Lus10006322	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9161	32	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	0.0	GRAS family protein

Link Out ? help Back to Top
Phytozome	Lus10006322