PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10006173
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 174aa    MW: 18798.6 Da    PI: 4.4944
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10006173genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.74.5e-211161155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 s+y+GVr +k +g+Wv+eIr+p   g ++r++lg+f+t+e+Aa+a++aa+++++g
  Lus10006173 11 SCYRGVRKRK-WGKWVSEIREP---GTKTRVWLGSFDTPEMAAAAYDAAALYFRG 61
                 79*****999.**********8...325************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.23E-231169IPR016177DNA-binding domain
PfamPF008479.8E-151161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-321270IPR001471AP2/ERF domain
PROSITE profilePS5103223.1031269IPR001471AP2/ERF domain
SMARTSM003801.8E-371275IPR001471AP2/ERF domain
PRINTSPR003672.4E-101324IPR001471AP2/ERF domain
CDDcd000184.90E-231371No hitNo description
PRINTSPR003672.4E-103551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MSNGGGSGTP SCYRGVRKRK WGKWVSEIRE PGTKTRVWLG SFDTPEMAAA AYDAAALYFR  60
GPEARLNFPE VAHCLPRPES SSPDDIRRAA HEAAIRAGPM DWSGDSSFNV GGDSGSGSGA  120
VDDESGGPNV GPVTAINESP MDSPQRWMMD YSTMYMNDVE WQDYGHSDSL WDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-151369663ATERF1
3gcc_A2e-151369663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10006173
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478205.11e-55PREDICTED: ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I25e-52ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A0D2SET93e-54A0A0D2SET9_GOSRA; Uncharacterized protein
STRINGLus100061731e-124(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.14e-39ERF family protein