PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10006085
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 234aa    MW: 25728.9 Da    PI: 7.4498
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10006085genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.31.8e-05184210430
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
          HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                   h ++Er+RR+++ ++f  L  ++P +
  Lus10006085 184 DHVMAERKRREKLSERFIALSAVVPGL 210
                  699*********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.521180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-6184221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.27E-7185226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.70E-5185213No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MEVLQTEWMP ELGMEDPSFN YQYQSPFNFS IDDFDFDHHS FTPANCLMKF PNEEAAVNNP  60
PLIISPQSFT TTTSQSSDMN NNSRPAKIPK TTNNSSRASP PSSSSSPYSC IISFDSSSST  120
DSVPAVPQKP PRSSYPPAAV IKPEYSSIEN GLQYGCSVLN NATTSHGTKR PAAAMSRSPI  180
SAQDHVMAER KRREKLSERF IALSAVVPGL KKCLTILILW KTRWVIESSQ ILS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188193ERKRRE
2189194RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10006085
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100060851e-171(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.16e-16bHLH family protein