PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005967
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 199aa    MW: 21642 Da    PI: 5.9377
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005967genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.77.9e-154588955
          AP2  9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 + ++g+Wv+eIr+p++   ++r++lg+f  +e+Aaka++ a+ +l+g
  Lus10005967 45 RGRWGKWVSEIREPKK---KTRIWLGSFPVPEMAAKAYDVAAHCLKG 88
                 678**********854...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.7963496IPR001471AP2/ERF domain
PRINTSPR003672.0E-64051IPR001471AP2/ERF domain
CDDcd000182.51E-254498No hitNo description
PfamPF008471.8E-84488IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-244497IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-174498IPR016177DNA-binding domain
SMARTSM003804.5E-2744102IPR001471AP2/ERF domain
PRINTSPR003672.0E-67898IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MTEQQPPYTT TTHDNYTSPS PPPPPHKPTR PPPYHTSLRI DLLRRGRWGK WVSEIREPKK  60
KTRIWLGSFP VPEMAAKAYD VAAHCLKGRN AILNFPDQVN DLPTPSTCRS PRDIQAAAAL  120
AARSVIIRHH SSSSSPSSSP LSDGAGVNGV GRSDDEDDDG DGGFWEEIEL PELLITSSSS  180
YGELWSLEAG GKDSAADW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-13431001876Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005967
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021665044.14e-46ethylene-responsive transcription factor ERF023
SwissprotQ1ECI22e-41ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A2C9WP831e-42A0A2C9WP83_MANES; Uncharacterized protein
STRINGLus100059671e-143(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63752847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.18e-40ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]