PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005956
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Dof
Protein Properties Length: 342aa    MW: 36757.6 Da    PI: 9.3673
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005956genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.11.7e-3778137261
       zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                  +e+alkcprC+stntkfCy+nny+lsqPr+fCk+CrryWt+GGalr vPvGgg+r+n+k+
  Lus10005956  78 PEAALKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRTVPVGGGCRRNNKR 137
                  67899***************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-3062131IPR003851Zinc finger, Dof-type
PfamPF027011.4E-3181136IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.16182136IPR003851Zinc finger, Dof-type
PROSITE patternPS01361084120IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MAFPSSVSFY LDPSTWQQQQ QQQQSLSTEN GAGNNDRAIP PHPGGGDGGN NIMGSTSSAV  60
RKANSMAEKA RQAKIPQPEA ALKCPRCEST NTKFCYFNNY NLSQPRHFCK TCRRYWTRGG  120
ALRTVPVGGG CRRNNKRIKS KRTSSSSSSK SPQGVGGASC YGTSTSTYVP TSTSTTTHHH  180
LNLGQLPPLM PPLQHMHLGD YGNDMGLNFT GLLPSPATAP GSGVGSMLRM HQQNHHHHQF  240
PFFASLEQQQ SSGVLYEPSE KMESGAAGNS LLMSRNFLGK FMSSSSSGGD NSSNNNNDDQ  300
EMYSWQPPSS NNYNGWISNA AAVDATLPPG FTSPSSTSHL L*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005956
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100059560.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.13e-39DNA binding with one finger 2.4