PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10005949 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MYB_related | ||||||||
Protein Properties | Length: 96aa MW: 11137 Da PI: 8.6622 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.6 | 5.1e-07 | 47 | 85 | 5 | 45 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ E +l+ + +k+lG + W++Ia +++ gR ++++ +w Lus10005949 47 SEAEVDLIHRMHKLLGDR-WDLIAGRIP-GRKAEEIERFWI 85 77888999999*****99.*********.*********995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 3.2E-4 | 42 | 90 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.16E-5 | 45 | 84 | No hit | No description |
Pfam | PF00249 | 4.6E-6 | 47 | 85 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-9 | 47 | 85 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.5E-6 | 47 | 85 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048765 | Biological Process | root hair cell differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence Send to blast |
MEDKVVCRRK KKESYAAERK PAAAMASCSC SDDQEVTSKE WKLIEMSEAE VDLIHRMHKL 60 LGDRWDLIAG RIPGRKAEEI ERFWIMRTIL CRKNI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 7 | 12 | RRKKKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Involved in epidermal cell fate specification. Negative regulator of trichome development, including endoreplication, by lateral inhibition involving intercellular interactions. Promotes the formation of hair developing cells (trichoblasts) in H position in root epidermis, probably by inhibiting non-hair cell (atrichoblasts) formation. {ECO:0000269|PubMed:10368181, ECO:0000269|PubMed:12356720}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10005949 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negative autoregulation. Repressed by CPC. {ECO:0000269|PubMed:12356720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU828878 | 1e-113 | EU828878.1 Linum usitatissimum clone LU0010A11 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015964525.1 | 2e-27 | MYB-like transcription factor ETC3 | ||||
Refseq | XP_016200683.1 | 2e-27 | MYB-like transcription factor ETC3 | ||||
Refseq | XP_025650810.1 | 2e-27 | MYB-like transcription factor ETC3 | ||||
Refseq | XP_025697520.1 | 2e-27 | MYB-like transcription factor ETC3 | ||||
Swissprot | Q8GV05 | 2e-23 | TRY_ARATH; Transcription factor TRY | ||||
TrEMBL | A0A445D6F6 | 5e-26 | A0A445D6F6_ARAHY; Uncharacterized protein | ||||
STRING | Lus10005949 | 5e-63 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3583 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53200.1 | 4e-25 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10005949 |