PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005930
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ARF
Protein Properties Length: 784aa    MW: 87258.9 Da    PI: 6.7944
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005930genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.73.9e-22198298198
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+ltpsd++k+g +++p++ aee+       +++    +++  +d + + W++++iyr+ ++r++lt+GW+ F+ ++++  gD ++F   + +++e
  Lus10005930 198 FSKKLTPSDTSKHGGFSVPRRQAEEClpplnmsEEP--PVQEIAAKDIHDNLWRFRHIYRGDPKRHLLTSGWSTFATSKQISPGDQFIFV--RGENGE 291
                  88****************************964444..4458************************************************..449999 PP

                  .EEEEE- CS
           B3  92 lvvkvfr 98 
                  l+v+++r
  Lus10005930 292 LRVGIRR 298
                  *****98 PP
2Auxin_resp83.93.5e-28325410183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl...sGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+ha++t+s+F v+Y+P++ +seF v++ +++ka k+++s+G+Rfkm fe++++ e+r+    G +vg + +dp++W++S+W  Lk
  Lus10005930 325 ASHAVTTGSTFVVYYRPWSNSSEFLVPAGRYLKAAKIEYSPGTRFKMLFEGDECTEQRVerfEGRIVGNEPVDPLHWHDSEWERLK 410
                  789****************************************************99887779*******************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-31188302IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-35191308IPR015300DNA-binding pseudobarrel domain
CDDcd100172.26E-20196298No hitNo description
PROSITE profilePS5086311.857198300IPR003340B3 DNA binding domain
SMARTSM010194.4E-21198300IPR003340B3 DNA binding domain
PfamPF023623.1E-19198299IPR003340B3 DNA binding domain
PfamPF065071.0E-24325410IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
MILGRTKRMI MGSLDQVQAP LINSIHAAGG HHRHTAAAHL TRKRCIQRRS PPTQINNLPP  60
QSSSQPGDQD GLLDELWQAC AGPLVYVPKV GDYVYYFLQG HIQQVKSCIE QDCDMDLPHG  120
NSVPSKLLCR VVDVQRKAEA VTDEVFARIV LLPVLEPPDE EVISGSWKEE EEDDEDGSSN  180
SNQSWNQMIR SKNSKRSFSK KLTPSDTSKH GGFSVPRRQA EECLPPLNMS EEPPVQEIAA  240
KDIHDNLWRF RHIYRGDPKR HLLTSGWSTF ATSKQISPGD QFIFVRGENG ELRVGIRRGG  300
QQKKPPPSAT VISANCILHG ILADASHAVT TGSTFVVYYR PWSNSSEFLV PAGRYLKAAK  360
IEYSPGTRFK MLFEGDECTE QRVERFEGRI VGNEPVDPLH WHDSEWERLK VKWDATSDTL  420
ERPERVSSWN IDLIEPVQMK LPSPFGRHLK RNRDFLFDKT TSRLNATNSF NDNFITAAGM  480
LHNPFFPQSL NLEAFQERNK KRNAQQQLPN PKSPITPPHW LKLYSAASTN PNLPPNFPLI  540
PNQQSQGQGQ GEAGWTKMDH DGLSPTAPQA KTNWPVASSG DKYLSSSSSS SYSQGRKEDD  600
GNEALLASPP HQYEMDKRKC MVFGVNILSN ITETEFPSPQ IVTVTSGDLS ESTPAVADQC  660
LSNSDVVVVP LTSQHSTGGG SETISYTPTA ITTIPPNIAN CSIVIKVLKH GSQLGRLVDL  720
AQFNGHDQLV RELDRMFGFR GSLVDGSSGW HVTYVDAADS QHHHDSTSEI MFPIADRQWQ  780
LSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-114614326353Auxin response factor 1
4ldw_A1e-114614326353Auxin response factor 1
4ldw_B1e-114614326353Auxin response factor 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005930
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8873731e-123HQ887373.1 Linum usitatissimum clone GMU2AYZ01AZ07G microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100059300.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-110auxin response factor 2