PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005864
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 404aa    MW: 43654.8 Da    PI: 8.8439
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005864genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.2e-15116162148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd +lv++v  lG++ W+ Ia+++  gR +kqc++rw+++l
      Lus10005864 116 KGQWTEEEDRKLVRLVGCLGTKKWAHIAEKLT-GRAGKQCRERWHNHL 162
                      799****************************9.*************97 PP
2Myb_DNA-binding54.13.7e-17168210145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r++W++eE+ +lv+a++  G++ W+ Ia++++ gRt++ +k++w+
      Lus10005864 168 RDAWSEEEEIILVNAHANIGNK-WAEIAKRIP-GRTENAIKNHWN 210
                      789*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.624111166IPR017930Myb domain
SuperFamilySSF466891.09E-28113209IPR009057Homeodomain-like
SMARTSM007172.1E-13115164IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-24117169IPR009057Homeodomain-like
CDDcd001671.67E-13119162No hitNo description
PfamPF139214.9E-17119177No hitNo description
SMARTSM007173.1E-14167215IPR001005SANT/Myb domain
PROSITE profilePS5129420.373167217IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-20170215IPR009057Homeodomain-like
CDDcd001671.20E-11170210No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MEGGDLLGYR RNVIRPIPQQ LTAIDGLLWR APATTPSHHI DHLSHVIMAP AVNNPPPSGF  60
SEAGQLNMSG GGAGGWPSTT SYQDLMRIVL QEGDKKTAMG GSRRKSTSSG ATSLIKGQWT  120
EEEDRKLVRL VGCLGTKKWA HIAEKLTGRA GKQCRERWHN HLRPNIRRDA WSEEEEIILV  180
NAHANIGNKW AEIAKRIPGR TENAIKNHWN ATIRRQSSRR KQTAVKPGEA PLTESSSSSS  240
TSTVLQEYIR NRTLQLTTPP ATSPATGTPG SSSSAASPQL PSLSESAAHD SPPPPAIFTD  300
TSNEEDLRFM QTYFPNNQTL PPSMSAATTS HVACIASSGK QYLQSDLYAS YLMHGGGSSF  360
ADYAAAGCLG GGGDQGPEMQ RDVDDQYGGK KEMDLIEMLA SRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-431102161107B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005864
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8870321e-64HQ887032.1 Linum usitatissimum clone GMU2AYZ01AEL5P microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464533.18e-74transcription factor MYB119
STRINGLus100058640.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.11e-55myb domain protein 119