PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10005834 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MYB | ||||||||
Protein Properties | Length: 329aa MW: 36587.6 Da PI: 6.7664 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3.1e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd +++ +v ++G g+W++++++ g++R++k+c++rw +yl Lus10005834 14 RGLWTPEEDAKILAYVSLYGIGNWTLVPKKAGLNRCGKSCRLRWTNYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.9 | 1.5e-15 | 68 | 110 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++T++E+el++++++ G++ W+ Iar ++ gRt++++k++w++ Lus10005834 68 DNFTPDEEELIIRLHEAIGSR-WSIIARQLP-GRTDNDVKNYWNT 110 68*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.29 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.91E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.43E-12 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.992 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 8.6E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-13 | 69 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.89E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052545 | Biological Process | callose localization | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MGRPPCCDKS NVKRGLWTPE EDAKILAYVS LYGIGNWTLV PKKAGLNRCG KSCRLRWTNY 60 LRPDLKHDNF TPDEEELIIR LHEAIGSRWS IIARQLPGRT DNDVKNYWNT KLKKKLQKIG 120 IDPITHKPIS KIINDFGNIS GINHGNQSAS PFMRKTLNSN NLNNNNNNPM VMNLQSEPSS 180 TTTTASSCSN TTTFMVENNT GCSSDYYFSH TNNSFFNHDY YSSSSASSSS TTPLSSSCQQ 240 YPQTDPLTWK EFLVSDPPTS SSAAANLSEG NGCLDMNERG NIGSNKNINA DDNNEGAASS 300 FVENMLDKER EMMLSQFPQL LDPSSFDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-28 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980). Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379). {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10005834 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021654758.1 | 1e-106 | transcription factor MYB35-like | ||||
Swissprot | Q9LSI7 | 2e-93 | MYB35_ARATH; Transcription factor MYB35 | ||||
TrEMBL | A0A067LL30 | 1e-104 | A0A067LL30_JATCU; MYB family protein | ||||
STRING | Lus10005834 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2942 | 34 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 3e-89 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10005834 |
Publications ? help Back to Top | |||
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