PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005777
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family G2-like
Protein Properties Length: 515aa    MW: 58239.6 Da    PI: 6.969
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005777genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like759.9e-24101154155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k++++Wt  LH++F++av++  G +kA Pk+ile+m v+ Lt+ehv+SHLQkYRl
  Lus10005777 101 KAKVVWTASLHNQFLDAVNHF-GLDKAYPKRILEFMRVPWLTREHVASHLQKYRL 154
                  6799*****************.********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23009.1E-4443No hitNo description
Gene3DG3DSA:3.40.50.23009.1E-48298No hitNo description
PROSITE profilePS512949.14498157IPR017930Myb domain
SuperFamilySSF466895.38E-1899158IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-2599158IPR009057Homeodomain-like
TIGRFAMsTIGR015577.3E-23101155IPR006447Myb domain, plants
PfamPF002493.9E-6104153IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MSADENEVKT LEDGVALYLM KPIKKDDLKN LWKYAYTTKT NEAKLTIVDH EEDTISASSV  60
NNIKSTHDLA KNTAHNKKKL GKRRSKEDDG EEEEEGHSRK KAKVVWTASL HNQFLDAVNH  120
FGLDKAYPKR ILEFMRVPWL TREHVASHLQ KYRLFLKKVS KKDLTSPTKV SPKGVSSNFF  180
NLFSLYKRMK PEDFEMIKQR RRRSPLSQYP YTSSNFATLR YPNDLHRFQD APAYNNPRTA  240
TLLNYCDNYN RIASCDTRVH MTGGNLYPDL NHNFSMNHEV SRASKSTFNG STASLLSNHF  300
NGGDVRSRNI RSSEYNSSMQ LPSFSTNLLP QLSVDRDMNS EWPHSSRQVN IIESSSGRID  360
NTPNINMKSS LSASNIVNGD ATLCDSMFNY QEYDNSAFPP SNQVIMDGVT KFTSPLENSP  420
SNNGEINNII NEFPQANLSS EPFTAAYKVQ DSNEHVNPNN FGGNSNFAND QGGKDIMGLG  480
RDESSHMEIL LTSKDTDWAD EFVQSLLGDD WETG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-1898160264ARR10-B
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10005777
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100057770.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101422534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.13e-28response regulator 21