PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10005451 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 224aa MW: 24860.2 Da PI: 4.3994 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.2 | 1.2e-07 | 123 | 166 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ r+RR+ri ++ +eL +l+P + K++ a++ + A +Y+k Lq Lus10005451 123 IAARKRRRRISEKTQELGKLIPGgN------KMNTADMFQAAAKYVKFLQ 166 677*******************955......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.97E-12 | 115 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.595 | 116 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.0E-11 | 121 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.8E-10 | 122 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.1E-5 | 123 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.32E-4 | 130 | 170 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MALSFSSHFD SSSFIFPADD DCQFPTTADD FFWPSETEFL FPPQLELAES FPHHDFVFPE 60 EDSVIEFDGG LTIPPTPEFI HLDELNFSAP PPLPVFQPPV GEFNLGTTKK QGNDSSELSV 120 QSIAARKRRR RISEKTQELG KLIPGGNKMN TADMFQAAAK YVKFLQAQLA VLQLTTSLQE 180 PIEMEKIVAS PAVQKKLYSE GKCLVPTELL HALAINELLA EKE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 129 | RKRRR |
2 | 126 | 131 | KRRRRI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10005451 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002270265.1 | 3e-41 | PREDICTED: transcription factor bHLH52 | ||||
TrEMBL | F6I3G3 | 8e-40 | F6I3G3_VITVI; Uncharacterized protein | ||||
STRING | Lus10005451 | 1e-161 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3459 | 30 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34820.1 | 1e-17 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10005451 |